@@ -21,6 +21,7 @@ Depends:

     R (>= 4.0.0)

 Imports:

     AnnotationDbi,

+    backbone,

     bs4Dash,

     colorspace,

     ComplexHeatmap,

@@ -73,6 +73,11 @@ importFrom(DT,formatStyle)

 importFrom(DT,renderDataTable)

 importFrom(RColorBrewer,brewer.pal)

 importFrom(S4Vectors,mcols)

+importFrom(backbone,backbone.extract)

+importFrom(backbone,fdsm)

+importFrom(backbone,hyperg)

+importFrom(backbone,sdsm)

+importFrom(backbone,universal)

 importFrom(bs4Dash,bs4Card)

 importFrom(bs4Dash,bs4DashBody)

 importFrom(bs4Dash,bs4DashControlbar)

@@ -120,6 +125,8 @@ importFrom(igraph,"V<-")

 importFrom(igraph,E)

 importFrom(igraph,V)

 importFrom(igraph,add_edges)

+importFrom(igraph,as_adjacency_matrix)

+importFrom(igraph,as_incidence_matrix)

 importFrom(igraph,delete.edges)

 importFrom(igraph,get.edgelist)

 importFrom(igraph,graph.data.frame)

@@ -6,6 +6,7 @@

 #' @author Federico Marini \email{marinif@@uni-mainz.de}

 #'

 #' @importFrom AnnotationDbi Definition GOID Ontology Secondary Synonym Term

+#' @importFrom backbone backbone.extract fdsm hyperg sdsm universal

 #' @importFrom bs4Dash bs4Card bs4DashBody bs4DashControlbar

 #' bs4DashFooter bs4DashNavbar bs4DashPage bs4DashSidebar

 #' bs4InfoBox bs4InfoBoxOutput bs4SidebarMenu

@@ -28,7 +29,8 @@

 #' @importFrom graphics par plot

 #' @importFrom grDevices colorRampPalette rgb col2rgb

 #' @importFrom grid gpar

-#' @importFrom igraph add_edges delete.edges "%du%" E "E<-" graph.data.frame induced_subgraph

+#' @importFrom igraph add_edges as_adjacency_matrix as_incidence_matrix delete.edges

+#' "%du%" E "E<-" graph.data.frame induced_subgraph

 #' make_full_graph permute.vertices strength V "V<-" vcount get.edgelist

 #' @importFrom matrixStats rowSds

 #' @importFrom methods is