@@ -21,40 +21,41 @@ Description: This package provides a Shiny application that aims to combine at

 Depends:

     R (>= 3.5.0)

 Imports:

-    shiny,

+    AnnotationDbi,

+    bs4Dash,

+    ComplexHeatmap,

+    dendextend,

+    DESeq2,

+    dplyr,

     DT,

-    rintrojs,

-    igraph,

-    visNetwork,

-    scales,

-    RColorBrewer,

-    grDevices,

-    graphics,

-    S4Vectors,

+    dynamicTreeCut,

+    ggforce,

     ggplot2,

     ggrepel,

     GO.db,

-    AnnotationDbi,

-    plotly,

-    tidyr,

-    utils,

-    SummarizedExperiment,

-    stats,

-    matrixStats,

-    DESeq2,

-    ComplexHeatmap,

+    graphics,

+    grDevices,

     grid,

+    igraph,

+    matrixStats,

     methods,

+    plotly,

+    RColorBrewer,

+    rintrojs,

+    rlang,

+    rmarkdown,

+    S4Vectors,

+    scales,

+    shiny,

     shinycssloaders,

-    bs4Dash,

     shinyWidgets,

+    stats,

+    SummarizedExperiment,

+    tidyr,

+    tools,

+    utils,

     viridis,

-    dplyr,

-    ggforce,

-    rlang,

-    rmarkdown,

-    dendextend,

-    dynamicTreeCut

+    visNetwork

 Suggests:

     knitr,

     BiocStyle,

@@ -126,6 +126,8 @@ importFrom(stats,runif)

 importFrom(stats,var)

 importFrom(tidyr,pivot_longer)

 importFrom(tidyr,separate_rows)

+importFrom(tools,file_ext)

+importFrom(tools,file_path_sans_ext)

 importFrom(utils,browseURL)

 importFrom(utils,citation)

 importFrom(utils,data)

@@ -43,6 +43,7 @@

 #' @importFrom shinyWidgets dropdownButton tooltipOptions

 #' @import SummarizedExperiment

 #' @importFrom tidyr separate_rows pivot_longer

+#' @importFrom tools file_ext file_path_sans_ext

 #' @importFrom utils read.delim sessionInfo browseURL citation data

 #' @importFrom visNetwork renderVisNetwork visIgraph visNetworkOutput visOptions

 #' @importFrom viridis viridis