Browse code

Documenting data object from Enrichr

Federico Marini authored on 26/05/2020 08:31:01
Showing 1 changed files

... ...
@@ -38,3 +38,31 @@ NULL
38 38
 #' @name topgoDE_macrophage_IFNg_vs_naive
39 39
 #' @docType data
40 40
 NULL
41
+
42
+
43
+#' A sample output from Enrichr
44
+#'
45
+#' A sample output object as created from a call to Enrichr, with the interface
46
+#' provided by `enrichR` - using the `enrichr()` function
47
+#'
48
+#' @details This object has been created on the data from the `macrophage` package
49
+#' by analyzing downstream the differentially expressed genes
50
+#' when comparing IFNg treated samples vs naive samples, accounting
51
+#' for the different cell lines included.
52
+#'
53
+#' Details on how this object has been created are included in the `create_gt_data.R`
54
+#' script, included in the `scripts` folder of the `GeneTonic` package.
55
+#'
56
+#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene
57
+#' expression indicate a role for enhancer priming in immune response",
58
+#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
59
+#'
60
+#' @name enrichr_output_macrophage
61
+#' @docType data
62
+NULL
63
+
64
+
65
+
66
+
67
+
68
+