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@@ -90,3 +90,27 @@ NULL |
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#' @docType data |
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NULL |
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+ |
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+#' A sample output from fgsea |
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+#' |
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+#' A sample output object as created from a call to the `fgsea()` function, in |
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+#' the `fgsea` package, as a practical framework for performing GSEA |
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+#' |
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+#' @details This object has been created on the data from the `macrophage` package |
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+#' by analyzing downstream the differentially expressed genes |
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+#' when comparing IFNg treated samples vs naive samples, accounting |
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+#' for the different cell lines included. |
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+#' |
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+#' Details on how this object has been created are included in the `create_gt_data.R` |
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+#' script, included in the `scripts` folder of the `GeneTonic` package. |
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+#' |
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+#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene |
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+#' expression indicate a role for enhancer priming in immune response", |
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+#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7. |
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+#' |
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+#' @name fgseaRes |
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+#' @docType data |
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+NULL |
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+ |
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+ |
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+ |
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+% Generated by roxygen2: do not edit by hand |
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+% Please edit documentation in R/GeneTonic-data.R |
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+\docType{data}
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+\name{fgseaRes}
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+\alias{fgseaRes}
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+\title{A sample output from fgsea}
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+\description{
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+A sample output object as created from a call to the \code{fgsea()} function, in
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+the \code{fgsea} package, as a practical framework for performing GSEA
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+} |
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+\details{
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+This object has been created on the data from the \code{macrophage} package
|
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+by analyzing downstream the differentially expressed genes |
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+when comparing IFNg treated samples vs naive samples, accounting |
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+for the different cell lines included. |
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+ |
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+Details on how this object has been created are included in the \code{create_gt_data.R}
|
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+script, included in the \code{scripts} folder of the \code{GeneTonic} package.
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+} |
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+\references{
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+Alasoo, et al. "Shared genetic effects on chromatin and gene |
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+expression indicate a role for enhancer priming in immune response", |
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+Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7. |
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+} |
