1. GWASTools
  2. Graph
Graph of GWASTools
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  • e8a1cbb (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:18 -0400;
  • 1eb1398 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:18 -0400;
  • 720bfc6 resolve version number by Stephanie M. Gogarten <sdmorris@uw.edu> 2023-06-22 05:37:41 -0700;
  • ec88efc version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2023-06-22 05:36:05 -0700;
  • cfabab1 Merge pull request <a href="#14">#14</a> from sonali8434/Affymetrix-Rmd by Stephanie M. Gogarten <sdmorris@uw.edu> 2023-06-22 05:34:00 -0700;
  • 19cd6c8 added sonali as contributor by sonali <sonalikumari3826@gmail.com> 2023-06-22 12:46:19 +0530;
  • 3def3e9 Merge branch 'Affymetrix-Rmd' of https://github.com/sonali8434/GWASTools into Affymetrix-Rmd by sonali <sonalikumari3826@gmail.com> 2023-06-21 22:29:55 +0530;
  • f5fd6df Updated author name by sonali <sonalikumari3826@gmail.com> 2023-06-21 22:26:28 +0530;
  • a2fd28a fix function by Sonali Kumari <109299402+sonali8434@users.noreply.github.com> 2023-06-18 14:48:46 +0530;
  • d3bcf62 Remove file.Rnw by sonali <sonalikumari3826@gmail.com> 2023-06-15 19:04:52 +0530;
  • 2e90817 Convert file to Rmd by sonali <sonalikumari3826@gmail.com> 2023-06-15 19:04:11 +0530;
  • 009441a Update DESCRIPTION with BiocStyle, knitr, VignetteBuilder by sonali <sonalikumari3826@gmail.com> 2023-06-15 19:03:09 +0530;
  • 791d87e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:17 -0400;
  • bfec04d (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:17 -0400;
  • 5d08419 fix man page warnings in R-devel by Stephanie M. Gogarten <sdmorris@uw.edu> 2022-12-16 00:04:21 -0800;
  • 0127e8c bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:22 -0400;
  • 6788af5 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:22 -0400;
  • 42d7cbd version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2022-08-22 14:09:58 -0700;
  • d74527c (origin/RELEASE_3_15, RELEASE_3_15) version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2022-08-22 14:09:03 -0700;
  • 24dab0d accommodate change in anova output name by Stephanie M. Gogarten <sdmorris@uw.edu> 2022-08-22 14:03:23 -0700;
  • 1c097b3 accommodate change in anova output name by Stephanie M. Gogarten <sdmorris@uw.edu> 2022-08-22 14:03:23 -0700;
  • 8edd49e bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:14 +0000;
  • a873aae bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:14 +0000;
  • e9fff97 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:43 +0000;
  • 438eb92 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:43 +0000;
  • d28cd54 getAlleleA/B in GenotypeData objects will read from GDS by Stephanie M. Gogarten <sdmorris@uw.edu> 2021-10-14 00:41:22 -0700;
  • 4417fee test for equality not identical by Stephanie M. Gogarten <sdmorris@uw.edu> 2021-07-19 17:31:44 -0700;
  • c0829b2 use package prefix for suggested package in tests by Stephanie M. Gogarten <sdmorris@uw.edu> 2021-07-19 17:31:22 -0700;
  • b79c11e bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:15 +0000;
  • a04d6d6 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:15 +0000;
  • c3d8304 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:14 -0400;
  • ea79df8 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:14 -0400;
  • a8854f9 use fwrite instead of write.table by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-30 17:15:30 -0700;
  • ffb7068 Merge branch 'data.table' by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-30 00:18:12 -0700;
  • c759aea use fread instead of read.table by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-30 00:16:01 -0700;
  • c6ca5e7 replace dplyr::bind_rows with faster data.table::rbindlist by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-29 22:18:23 -0700;
  • fda4bce (origin/RELEASE_3_11, RELEASE_3_11) fix failing unit test by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-22 16:00:37 -0700;
  • 64025cb fix failing unit test by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-09-22 16:00:37 -0700;
  • ef46c89 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:15 +0000;
  • 4984ec1 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:15 +0000;
  • 8a3fd58 add cluster option to assocCoxPH by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-07 16:03:32 -0800;
  • 45418ce move duplicated coxph code into subfunctions, test and clean up by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-07 15:22:37 -0800;
  • 60bca5c add LRtest option to assocCoxPH by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-07 11:18:59 -0800;
  • 8cdf2c5 Merge pull request <a href="#7">#7</a> from smgogarten/allow_fork by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-07 09:43:02 -0800;
  • 1b8cafa use bind_rows instead of rbind in more chrom anomaly functions by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 22:54:26 -0800;
  • e3c27f0 add allow.fork to man pages by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 22:38:08 -0800;
  • 8865bab allow.fork should always be a named argument by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 22:04:33 -0800;
  • 384d1a0 add unit tests for allow.fork by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 22:03:51 -0800;
  • 14eb8f1 allow.fork does not need to be a slot by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 22:02:40 -0800;
  • 5c9d738 import only bind_rows function and not tidyverse by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 15:23:30 -0800;
  • 76449ef Merge pull request <a href="#3">#3</a> from DanielEWeeks/master by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-06 15:10:53 -0800;
  • d8c1417 use is.matrix() instead of class() by Stephanie M. Gogarten <sdmorris@uw.edu> 2020-02-05 13:58:30 -0800;
  • 971991c bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:56 -0400;
  • 8f581fe (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:22 -0400;
  • 5b0b1ba version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-10-07 13:44:26 -0700;
  • ea23223 (origin/RELEASE_3_9, RELEASE_3_9) version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-10-07 13:43:42 -0700;
  • 2583480 bug fix: poisson model in assocRegression by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-10-07 13:42:11 -0700;
  • 5307289 bug fix: poisson model in assocRegression by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-10-07 13:42:11 -0700;
  • bb0f952 fix failing unit test by smgogarten <smgogarten@velasca> 2019-06-10 11:26:33 -0700;
  • 3a1d001 Merge remote-tracking branch 'upstream/master' by Daniel E. Weeks <weeks@pitt.edu> 2019-05-13 14:20:35 -0400;
  • 33d776c use set.seed for deterministic unit tests by smgogarten <smgogarten@velasca> 2019-05-09 17:01:30 -0700;
  • fb116da use set.seed for deterministic unit tests by smgogarten <smgogarten@velasca> 2019-05-09 17:01:30 -0700;
  • 32c8455 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:07 -0400;
  • 5306806 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:31 -0400;
  • 43ffc0b update README by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-04-22 11:25:44 -0700;
  • 1cb90d1 bug fix in unit test by smgogarten <smgogarten@velasca> 2019-04-04 15:52:01 -0700;
  • 7d26803 allow order="selection" in MatrixGenotypeReader::getGenotypeSelection by Stephanie M. Gogarten <sdmorris@uw.edu> 2019-04-01 14:12:28 -0700;
  • 50094f3 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • b1c2cf9 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
  • f829987 version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-10-08 16:04:55 -0700;
  • 8c76429 update genoDataAsVCF for recent changes to VariantAnnotation by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-10-08 16:03:08 -0700;
  • 4a23054 GdsReader was not passing forward the 'allow.fork' value. This may fix it. by Daniel E. Weeks <weeks@pitt.edu> 2018-10-05 09:28:44 -0400;
  • 535dfe5 Added import(tidyverse) to the NAMESPACE by Daniel E. Weeks <weeks@pitt.edu> 2018-10-04 17:42:31 -0400;
  • 95aa488 Revert "Added 'import(tidyverse)' to the NAMESPACE, and changed every" by Daniel E. Weeks <weeks@pitt.edu> 2018-10-04 17:41:45 -0400;
  • d1856fb Updating class definition of GdsReader to include 'allow.fork' by Daniel E. Weeks <weeks@pitt.edu> 2018-10-04 16:44:07 -0400;
  • 24d26ab Adjusting initializer for GdsReader by Daniel E. Weeks <weeks@pitt.edu> 2018-10-04 16:33:32 -0400;
  • 1771589 Added a sentence to the man page for GWASTools stating that this is the forked version. by Daniel E. Weeks <weeks@pitt.edu> 2018-10-03 15:38:48 -0400;
  • 318ad75 Added 'import(tidyverse)' to the NAMESPACE, and changed every 'rbind' to 'bind_rows'. by Daniel E. Weeks <weeks@pitt.edu> 2018-10-03 15:15:07 -0400;
  • e636e6f Adding support to the 'allow.fork' option to GdsGenotypeReader, GdsIntensityReader, GdsReader, gdsSubset, and gdsSubsetCheck. by Daniel E. Weeks <weeks@pitt.edu> 2018-10-03 10:11:21 -0400;
  • b39fb0b In 'anomDetectLOH', changed all 'rbind' calls to 'bind_rows' instead, which is much faster. by Daniel E. Weeks <weeks@pitt.edu> 2018-10-02 17:55:03 -0400;
  • 118c8e5 add README by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-09-26 14:50:38 -0700;
  • 9124dfd replace ncdf package reference with ncdf4 by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-09-26 14:49:23 -0700;
  • 6920dc3 add resetIterator method by smgogarten <smgogarten@velasca> 2018-08-26 11:54:05 -0700;
  • 97aeb72 add snpInclude argument to GenotypeBlockIterator by smgogarten <smgogarten@velasca> 2018-08-26 11:29:37 -0700;
  • 7ca1123 add github URL by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-30 10:37:56 -0700;
  • 02715dd (origin/RELEASE_3_7, RELEASE_3_7) simplify genotype selection by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-23 16:37:20 -0700;
  • 4a26321 simplify genotype selection by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-23 16:37:20 -0700;
  • 13e0910 version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-23 15:23:01 -0700;
  • 5ba437d fix bug in getGenotypeSelection by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-23 15:18:28 -0700;
  • 5672fd5 fix bug in getGenotypeSelection by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-05-23 15:18:28 -0700;
  • da8dc04 Merge branch 'feature-iterator' by smgogarten <smgogarten@velasca> 2018-05-03 15:30:13 -0700;
  • 3889eb0 add iterator class by smgogarten <smgogarten@velasca> 2018-05-03 15:27:29 -0700;
  • f428957 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 0d4a0a7 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
  • 966a5a0 first commit for iterator by smgogarten <smgogarten@velasca> 2018-04-19 09:14:18 -0700;
  • e57a2df version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-01-18 11:25:03 -0800;
  • d2a1c8b (origin/RELEASE_3_6, RELEASE_3_6) version bump by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-01-18 11:24:13 -0800;
  • 35abfae fix links to other packages in man pages by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-01-18 11:20:30 -0800;
  • 343ea24 fix links to other packages in man pages by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-01-18 11:20:30 -0800;
  • 134a348 Merge branch 'sarahcn-vcfCheck-feature' by Stephanie M. Gogarten <sdmorris@uw.edu> 2018-01-02 12:34:42 -0800;