March 30, 2021
View0c137ddd

Updated gsva() manual page.

Robert Castelo authored on 30/03/2021 13:25:12
November 20, 2020
View9136daba

added hdf5 support for plage method

pablo-rodr-bio2 authored on 20/11/2020 18:38:41
November 2, 2020
View763cb48d

adding dgCMatrix/list support

pablo-rodr-bio2 authored on 02/11/2020 18:20:08
View25da8f62

Fixed file encoding for man/gsva.Rd.

[rcastelo] authored on 02/11/2020 14:49:46
October 29, 2020
Viewe48a4a3c

adding SingleCellExperiment support

pablo-rodr-bio2 authored on 29/10/2020 11:43:14
May 29, 2020
View09cf73d4

Bugfix when input data is a SummarizedExperiment. Corresponding unit test added.

Robert Castelo authored on 29/05/2020 15:47:09
December 16, 2019
View8de45582

Added methods to take expression data in a SummarizedExperiment object.

Robert Castelo authored on 16/12/2019 11:46:25
December 10, 2019
View5fa44af1

Removed the parallel.type argument from gsva(). Updated manual page.

Robert Castelo authored on 10/12/2019 13:09:53
November 29, 2019
View5df67ea4

Added the possibility of doing the ECDF estimation using parallel calculations.

Robert Castelo authored on 29/11/2019 12:12:34
March 16, 2018
Viewd34b4523

Deprecated functions become defunct.

Robert Castelo authored on 16/03/2018 07:36:20
September 6, 2017
View53806420

Deprecate arguments no.bootstraps and bootstrap.percent, simplify return value to the object storing the enrichment scores and add argument return.old.value to provide backward compability for the return value during the next release.

[rcastelo] authored on 06/09/2017 15:00:02
July 17, 2017
Viewec73c995

Arguments rnaseq and kernel deprecated and replaced by new argument kcdf.

Robert Castelo authored on 17/07/2017 17:11:21
June 19, 2017
View48436127

Updated implementation of the option abs.ranking=TRUE to use the original Kuiper statistic.

Robert Castelo authored on 19/06/2017 14:35:29
April 19, 2017
View9fb749c5

Fixed NAMESPACE and updated documentation on the rnaseq argument of the main function gsva().

Robert Castelo authored on 19/04/2017 20:44:29
November 4, 2014
View788fd19a

Fixed error handling when no genes in gene sets match genes in expression data.

Robert Castelo authored on 04/11/2014 13:13:04