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Merge branch 'rcastelo:master' into master

Pablo Rodriguez authored on 18/11/2021 08:08:18 • GitHub committed on 18/11/2021 08:08:18
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 Package: GSVA
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-Version: 1.41.3
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+Version: 1.41.4
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 Title: Gene Set Variation Analysis for microarray and RNA-seq data
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 Authors@R: c(person("Justin", "Guinney", role=c("aut", "cre"), email="justin.guinney@sagebase.org"),
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              person("Robert", "Castelo", role="aut", email="robert.castelo@upf.edu"),
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+CHANGES IN VERSION 1.50
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+-----------------------
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+
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+BUG FIXES
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+   o Bugfix for https://github.com/rcastelo/GSVA/issues/54 to force filtering genes with constant expression behaving the same regardless of the delayed or non-delayed nature of the data container.
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 CHANGES IN VERSION 1.40
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 -----------------------
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@@ -13,7 +13,8 @@ test_delayed <- function(){
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   x1 <- gsva(m, gene.sets, method="plage")
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   x2 <- gsva(h5, gene.sets, method="plage")
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-  checkEqualsNumeric(as.vector(t(x1)), as.vector(t(x2)))
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+  ## SVD sign is arbitrary and implementation-dependent
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+  checkEqualsNumeric(abs(as.vector(t(x1))), abs(as.vector(t(x2))))
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   x1 <- gsva(m, gene.sets, method="zscore")
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   x2 <- gsva(h5, gene.sets, method="zscore")
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   checkEqualsNumeric(as.vector(t(x1)), as.vector(t(x2)))
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 }
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