@@ -1,5 +1,5 @@

 Package: GSVA

-Version: 1.41.3

+Version: 1.41.4

 Title: Gene Set Variation Analysis for microarray and RNA-seq data

 Authors@R: c(person("Justin", "Guinney", role=c("aut", "cre"), email="justin.guinney@sagebase.org"),

              person("Robert", "Castelo", role="aut", email="robert.castelo@upf.edu"),

@@ -1,3 +1,10 @@

+CHANGES IN VERSION 1.50

+-----------------------

+

+BUG FIXES

+

+   o Bugfix for https://github.com/rcastelo/GSVA/issues/54 to force filtering genes with constant expression behaving the same regardless of the delayed or non-delayed nature of the data container.

+

 CHANGES IN VERSION 1.40

 -----------------------

@@ -13,7 +13,8 @@ test_delayed <- function(){

   x1 <- gsva(m, gene.sets, method="plage")

   x2 <- gsva(h5, gene.sets, method="plage")

-  checkEqualsNumeric(as.vector(t(x1)), as.vector(t(x2)))

+  ## SVD sign is arbitrary and implementation-dependent

+  checkEqualsNumeric(abs(as.vector(t(x1))), abs(as.vector(t(x2))))

   x1 <- gsva(m, gene.sets, method="zscore")

   x2 <- gsva(h5, gene.sets, method="zscore")

@@ -25,7 +26,3 @@ test_delayed <- function(){

   checkEqualsNumeric(as.vector(t(x1)), as.vector(t(x2)))

 }

-

-

-

-