@@ -1,8 +1,8 @@

 Package: GSVA

-Version: 1.23.3

+Version: 1.23.4

 Title: Gene Set Variation Analysis for microarray and RNA-seq data

-Author: Justin Guinney with contributions from Robert Castelo

-Maintainer: Justin Guinney <justin.guinney@sagebase.org>

+Authors@R: c(person("Justin", "Guinney", role=c("aut", "cre"), email="justin.guinney@sagebase.org"),

+             person("Robert", "Castelo", role="aut", email="robert.castelo@upf.edu"))

 Depends: R (>= 2.13.0)

 Imports: methods, BiocGenerics, Biobase, GSEABase (>= 1.17.4)

 Suggests: limma, RColorBrewer, genefilter, mclust,

@@ -266,6 +266,9 @@ setMethod("gsva", signature(expr="matrix", gset.idx.list="list"),

 	}

   if (method == "ssgsea") {

+    if (no.bootstraps > 0)

+      stop("no.bootstraps > 0 does not work with method='ssgsea'")

+

 	  if(verbose)

 		  cat("Estimating ssGSEA scores for", length(gset.idx.list),"gene sets.\n")

@@ -275,6 +278,9 @@ setMethod("gsva", signature(expr="matrix", gset.idx.list="list"),

   }

   if (method == "zscore") {

+    if (no.bootstraps > 0)

+      stop("no.bootstraps > 0 does not work with method='zscore'")

+

     if (rnaseq)

       stop("rnaseq=TRUE does not work with method='zscore'.")

@@ -285,6 +291,9 @@ setMethod("gsva", signature(expr="matrix", gset.idx.list="list"),

   }

   if (method == "plage") {

+    if (no.bootstraps > 0)

+      stop("no.bootstraps > 0 does not work with method='plage'")

+

     if (rnaseq)

       stop("rnaseq=TRUE does not work with method='plage'.")