Browse code

Updated vignette.

Robert Castelo authored on 30/03/2021 20:12:25
Showing2 changed files

... ...
@@ -1,5 +1,5 @@
1 1
 Package: GSVA
2
-Version: 1.39.21
2
+Version: 1.39.22
3 3
 Title: Gene Set Variation Analysis for microarray and RNA-seq data
4 4
 Authors@R: c(person("Justin", "Guinney", role=c("aut", "cre"), email="justin.guinney@sagebase.org"),
5 5
              person("Robert", "Castelo", role="aut", email="robert.castelo@upf.edu"),
... ...
@@ -42,7 +42,8 @@ bibliography: GSVA.bib
42 42
 ```{r setup, include=FALSE}
43 43
 options(width=80)
44 44
 knitr::opts_chunk$set(collapse=TRUE,
45
-                      message=FALSE)
45
+                      message=FALSE,
46
+                      comment="")
46 47
 ```
47 48
 
48 49
 # Quick start
... ...
@@ -271,7 +272,9 @@ as illustrated before in the quick start section, where we defined a toy collect
271 272
 of three gene sets stored in a list object called `gs`:
272 273
 
273 274
 ```{r}
274
-gs
275
+class(gs)
276
+length(gs)
277
+head(lapply(gs, head))
275 278
 ```
276 279
 
277 280
 Using a Bioconductor organism-level package such as