| 919e21e0 |
useDynLib(GSVA)
import(methods)
|
| 16a8c25c |
|
| 84ad4e67 |
importClassesFrom(Biobase, ExpressionSet)
|
| 5fa44af1 |
importClassesFrom(SummarizedExperiment, SummarizedExperiment)
|
| 84ad4e67 |
importClassesFrom(GSEABase, GeneSetCollection)
|
| e48a4a3c |
importClassesFrom(SingleCellExperiment, SingleCellExperiment)
|
| 763cb48d |
importClassesFrom(Matrix, dgCMatrix)
|
| 9136daba |
importClassesFrom(DelayedArray, DelayedArray)
importClassesFrom(HDF5Array, HDF5Array)
|
| 9fb749c5 |
importMethodsFrom(Biobase, featureNames,
phenoData,
|
| 5df67ea4 |
experimentData,
exprs,
annotation)
|
| 9fb749c5 |
|
| 8de45582 |
importMethodsFrom(S4Vectors, metadata,
"metadata<-")
|
| 0093798f |
importMethodsFrom(IRanges, match)
|
| 8de45582 |
importMethodsFrom(SummarizedExperiment, assays,
colData)
|
| 9fb749c5 |
importMethodsFrom(GSEABase, geneIds,
incidence)
|
| 5df67ea4 |
importMethodsFrom(BiocParallel, bpiterate,
|
| 262a4397 |
"bpworkers<-",
bplapply,
"bpprogressbar<-")
|
| 5df67ea4 |
|
| 9fb749c5 |
importFrom(graphics, plot)
importFrom(stats, ecdf,
|
| 1a9a4353 |
na.omit,
sd)
|
| 8de45582 |
importFrom(utils, installed.packages,
setTxtProgressBar,
|
| dfe03f19 |
txtProgressBar,
read.csv,
write.csv)
|
| 8de45582 |
importFrom(S4Vectors, SimpleList)
|
| 0093798f |
importFrom(IRanges, CharacterList)
|
| dfe03f19 |
importFrom(GSEABase, AnnoOrEntrezIdentifier,
mapIdentifiers,
getGmt)
|
| 8de45582 |
importFrom(SummarizedExperiment, SummarizedExperiment)
|
| 5df67ea4 |
importFrom(parallel, splitIndices)
importFrom(BiocParallel, SerialParam,
MulticoreParam,
multicoreWorkers,
bpnworkers)
|
| e48a4a3c |
importFrom(SingleCellExperiment, SingleCellExperiment)
|
| 6e254afc |
importFrom(sparseMatrixStats, colRanks)
|
| 9136daba |
importFrom(DelayedArray, rowAutoGrid,
|
| ce958b8e |
colAutoGrid,
|
| 4d99d34c |
defaultAutoGrid,
|
| ce958b8e |
currentBlockId,
read_block,
viewportReduce,
|
| 9136daba |
write_block,
|
| 1a9a4353 |
close,
t)
importFrom(HDF5Array, HDF5RealizationSink,
writeHDF5Array)
|
| 9136daba |
importFrom(DelayedMatrixStats, rowSds)
|
| 1e5b296a |
importFrom(BiocSingular, runRandomSVD)
|
| 919e21e0 |
|
| dfe03f19 |
exportMethods(gsva,
filterGeneSets,
computeGeneSetsOverlap)
export(igsva)
|
