1. GRaNIE
  2. Graph
Graph of GRaNIE
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  • 35f2aa9 (origin/RELEASE_3_18, RELEASE_3_18) bugfix release by Christian Arnold <carnold@embl.de> 2023-10-26 17:47:33 +0200;
  • daf7701 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) Version jump change by Christian Arnold <carnold@embl.de> 2023-10-26 17:37:47 +0200;
  • 96494c3 Version 1.7.1, see Changelog by Christian Arnold <carnold@embl.de> 2023-10-26 17:35:40 +0200;
  • eb6db49 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:42:02 -0400;
  • 0fc9bee bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:42:02 -0400;
  • 0a46b81 GRaNIE: Version 1.5.3 by Christian Arnold <carnold@embl.de> 2023-08-22 14:07:51 +0200;
  • 25a3912 New version 1.5.2 by Christian Arnold <carnold@embl.de> 2023-08-16 17:43:34 +0200;
  • d3d7da1 (origin/RELEASE_3_17, RELEASE_3_17) Important changes that immprove stability related to biomaRt by Christian Arnold <carnold@embl.de> 2023-06-19 16:19:10 +0200;
  • 11313f2 Minor by Christian Arnold <carnold@embl.de> 2023-06-19 16:07:25 +0200;
  • c3e6753 Updated version to newest Bioc dev cycle by Christian Arnold <carnold@embl.de> 2023-06-19 15:47:22 +0200;
  • 884c1b8 Increased stability by replacing biomaRt query, added bicor correlation by Christian Arnold <carnold@embl.de> 2023-06-19 15:45:18 +0200;
  • 1ec8c25 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:38:11 -0400;
  • bd963f7 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:38:11 -0400;
  • 97c6ab9 (origin/RELEASE_3_16, RELEASE_3_16) Bugfix release by Christian Arnold <carnold@embl.de> 2023-04-06 11:31:33 +0200;
  • c9494b8 Many small bugfixes by Christian Arnold <carnold@embl.de> 2023-04-05 18:00:38 +0200;
  • ddf7ae0 small bugfixes by Christian Arnold <carnold@embl.de> 2023-03-10 17:20:50 +0100;
  • 172f45c small bugfixes by Christian Arnold <carnold@embl.de> 2023-03-10 16:16:29 +0100;
  • e7f8699 bugfixes by Christian Arnold <carnold@embl.de> 2023-03-09 23:23:51 +0100;
  • 20a1978 small bugfix by Christian Arnold <carnold@embl.de> 2023-03-06 22:04:20 +0100;
  • 52b484b bugfix by Christian Arnold <carnold@embl.de> 2023-03-06 16:39:43 +0100;
  • f386380 Bugfixes related to JASPAR additions by Christian Arnold <carnold@embl.de> 2023-03-06 16:19:55 +0100;
  • 0bd6c9a JASPAR updates by Christian Arnold <carnold@embl.de> 2023-03-04 11:28:17 +0100;
  • c06cd2a New version by Christian Arnold <christian.arnold@embl.de> 2023-03-02 20:19:06 +0100;
  • e4c24af New version by Christian Arnold <christian.arnold@embl.de> 2023-03-02 19:56:25 +0100;
  • a68a09c Further TF-peak GC adjustments and diagnostic plots by Christian Arnold <carnold@embl.de> 2023-02-27 16:20:36 +0100;
  • 43c7b35 Vignette and code updates by Christian Arnold <carnold@embl.de> 2023-02-21 20:29:23 +0100;
  • f4ccb17 version bump in release by Christian Arnold <carnold@embl.de> 2023-02-15 16:45:58 +0100;
  • 980c530 Fixed dplyr::if_else implementation change by Christian Arnold <carnold@embl.de> 2023-02-15 16:45:06 +0100;
  • 191bd18 Bugfixes related to dplyr::if_else by Christian Arnold <carnold@embl.de> 2023-02-15 16:36:01 +0100;
  • e769084 version bump in release by Christian Arnold <carnold@embl.de> 2023-02-13 18:07:27 +0100;
  • 542b820 bug fix: dplyr::if_else changes when NULL is involved by Christian Arnold <carnold@embl.de> 2023-02-13 18:06:43 +0100;
  • 6892eea Increased compatibility with newer versions of dplyr by Christian Arnold <christian.arnold@embl.de> 2023-02-09 18:25:20 +0100;
  • a2fce8a Version bump by Christian Arnold <carnold@embl.de> 2023-02-07 10:42:07 +0100;
  • 05cccd8 Vignette abstract added by Christian Arnold <carnold@embl.de> 2023-02-07 10:40:37 +0100;
  • 35450cf bugfix by Christian Arnold <carnold@embl.de> 2023-02-01 21:30:08 +0100;
  • b597827 minor bugfixes by Christian Arnold <carnold@embl.de> 2023-02-01 20:57:04 +0100;
  • 8f68456 Version bump, see Changelog by Christian Arnold <carnold@embl.de> 2023-01-31 18:56:04 +0100;
  • 9f94309 small fixes by Christian Arnold <carnold@embl.de> 2023-01-31 18:47:24 +0100;
  • 0f7520a Vignettes updates and fix for GenomeInfoDb::getChromInfoFromUCSC by Christian Arnold <carnold@embl.de> 2023-01-31 13:39:00 +0100;
  • ab89d83 small bugfix for new custom version argument by Christian Arnold <carnold@embl.de> 2023-01-27 16:46:26 +0100;
  • 2eecae2 Fixed a wrong URL in the news by Christian Arnold <carnold@embl.de> 2023-01-26 20:36:02 +0100;
  • f7f803e Fixed a wrong URL in the news by Christian Arnold <carnold@embl.de> 2023-01-26 20:33:02 +0100;
  • 0945dfd Added single-cell vignette first version by Christian Arnold <carnold@embl.de> 2023-01-26 20:22:45 +0100;
  • 37f5c30 New version by Christian Arnold <carnold@embl.de> 2023-01-24 14:58:53 +0100;
  • ae42792 Fixed rare error for unknown chr names that cannot be retrieved with biomaRt by Christian Arnold <carnold@embl.de> 2023-01-20 22:10:50 +0100;
  • cb764c3 Small vignette update by Christian Arnold <carnold@embl.de> 2023-01-20 14:43:30 +0100;
  • d42ae1d Minor changes by Christian Arnold <carnold@embl.de> 2023-01-20 02:09:23 +0100;
  • f87d8a9 Changes to loadExampleObject() by Christian Arnold <carnold@embl.de> 2023-01-20 02:01:20 +0100;
  • 2d5b6be Changes to loadExampleObject() by Christian Arnold <carnold@embl.de> 2023-01-20 01:53:07 +0100;
  • 57a69ae Removed duplicated documentation by Christian Arnold <christian.arnold@embl.de> 2023-01-19 18:16:25 +0100;
  • 6c935a9 Accidental syntax error fixed by Christian Arnold <christian.arnold@embl.de> 2023-01-19 18:07:05 +0100;
  • 32df88f Small changes by Christian Arnold <christian.arnold@embl.de> 2023-01-19 18:03:19 +0100;
  • e3025ed Removed unreleased.R, which was included accidentally by Christian Arnold <christian.arnold@embl.de> 2023-01-12 16:11:44 +0100;
  • 563d56a Added news by Christian Arnold <carnold@embl.de> 2022-12-22 07:51:05 +0100;
  • a21ea54 modified NEWS by Christian Arnold <carnold@embl.de> 2022-12-22 07:49:45 +0100;
  • 7a05d4f version bump in release by Christian Arnold <carnold@embl.de> 2022-12-22 07:47:23 +0100;
  • eb5a483 Bugfix by Christian Arnold <carnold@embl.de> 2022-12-22 07:41:27 +0100;
  • 9fd4689 version bump in devel by Christian Arnold <carnold@embl.de> 2022-12-22 07:42:08 +0100;
  • e9f6ad4 Bugfix by Christian Arnold <carnold@embl.de> 2022-12-22 07:41:27 +0100;
  • 0edc867 Documentation fixes by Christian Arnold <carnold@embl.de> 2022-12-19 13:58:31 +0100;
  • 3973231 Documentation fix by Christian Arnold <carnold@embl.de> 2022-12-19 13:54:19 +0100;
  • 08b4918 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-12-16 15:57:20 +0100;
  • 30e4cdd Bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-12-16 14:07:57 +0100;
  • e92de74 Changed default URL for GRN example object by Christian Arnold <christian.arnold@embl.de> 2022-12-16 11:31:41 +0100;
  • 35b4ef4 Version bump by Christian Arnold <carnold@embl.de> 2022-12-15 14:37:16 +0100;
  • fd771e2 version bump by Christian Arnold <carnold@embl.de> 2022-12-14 15:07:58 +0100;
  • a2b7703 version bump by Christian Arnold <carnold@embl.de> 2022-12-14 13:27:35 +0100;
  • 87269ed Documentation updates by Christian Arnold <carnold@embl.de> 2022-12-07 14:23:51 +0100;
  • cb1015a New version by Christian Arnold <carnold@embl.de> 2022-12-07 14:00:46 +0100;
  • f69b14f Bugfix by Christian Arnold <carnold@embl.de> 2022-12-06 16:48:16 +0100;
  • 02c3c32 Small fixes by Christian Arnold <carnold@embl.de> 2022-12-06 16:34:46 +0100;
  • d5f2589 Changed link to TFBS files by Christian Arnold <christian.arnold@embl.de> 2022-11-30 13:26:52 +0100;
  • 8aa162c README update by Christian Arnold <christian.arnold@embl.de> 2022-11-29 19:19:24 +0100;
  • bd9b9e6 minor by Christian Arnold <christian.arnold@embl.de> 2022-11-29 19:01:52 +0100;
  • 4656f59 Documentation updates by Christian Arnold <christian.arnold@embl.de> 2022-11-29 18:53:49 +0100;
  • 0ccc861 Version bump devel by Christian Arnold <christian.arnold@embl.de> 2022-11-29 13:34:27 +0100;
  • 83d6d42 Bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-11-29 13:33:46 +0100;
  • 00a92df Merging with new devel version, reduced package burden by Christian Arnold <christian.arnold@embl.de> 2022-11-22 12:02:08 +0100;
  • eba3a97 Fixing merge conflict with DESCRIPTION by Christian Arnold <christian.arnold@embl.de> 2022-11-22 12:00:20 +0100;
  • 54ff4d3 reduced package burden by Christian Arnold <christian.arnold@embl.de> 2022-11-22 11:58:28 +0100;
  • b0961c0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:03 -0400;
  • 22ba025 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:03 -0400;
  • da7e6c7 small change by Christian Arnold <carnold@embl.de> 2022-10-14 17:47:58 +0200;
  • 787c4d6 Bugfix for .makeObjectCompatible by Christian Arnold <carnold@embl.de> 2022-10-14 14:45:16 +0200;
  • 1d51211 Bugfixes in visualizeGRN by Christian Arnold <carnold@embl.de> 2022-10-13 18:57:09 +0200;
  • 95ffa62 Vignette updates by Christian Arnold <christian.arnold@embl.de> 2022-10-13 13:16:10 +0200;
  • 6e97d74 misc by Christian Arnold <carnold@embl.de> 2022-10-13 00:47:56 +0200;
  • eaba1ca New version by Christian Arnold <carnold@embl.de> 2022-10-13 00:47:16 +0200;
  • f53eebe Bugfix by Christian Arnold <carnold@embl.de> 2022-10-04 19:29:50 +0200;
  • 47a1b18 Bugfix by Christian Arnold <christian.arnold@embl.de> 2022-10-04 15:27:32 +0200;
  • 2ff0659 (origin/RELEASE_3_15, RELEASE_3_15) version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-09-27 12:50:11 +0200;
  • 7d9442c Small changes by Christian Arnold <christian.arnold@embl.de> 2022-09-27 12:47:15 +0200;
  • 1cb5f93 Attemtping to fix cache issue with vignette + small documenttion updates by Christian Arnold <carnold@embl.de> 2022-09-26 10:17:09 +0200;
  • f6752bc Version update by Christian Arnold <carnold@embl.de> 2022-09-23 16:42:39 +0200;
  • 6c431a9 Code cleanup and careful check for potential issues by Christian Arnold <carnold@embl.de> 2022-09-14 16:19:35 +0200;
  • 6733b72 Version bump by Christian Arnold <carnold@embl.de> 2022-09-14 10:59:35 +0200;
  • f117b09 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:29:44 +0200;
  • b701f0c bug fix: bug fix: allowMissingTFs in filterGRNAndConnectGenes filtered unnecessarily with filterLoops by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:19:40 +0200;
  • ae06991 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:20:32 +0200;
  • a559208 bug fix: bug fix: allowMissingTFs in filterGRNAndConnectGenes filtered unnecessarily with filterLoops by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:19:40 +0200;