Graph ofGRaNIE
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  • d5f2589 (HEAD -> master, origin/master, origin/HEAD) Changed link to TFBS files by Christian Arnold <christian.arnold@embl.de> 2022-11-30 13:26:52 +0100;
  • 8aa162c README update by Christian Arnold <christian.arnold@embl.de> 2022-11-29 19:19:24 +0100;
  • bd9b9e6 minor by Christian Arnold <christian.arnold@embl.de> 2022-11-29 19:01:52 +0100;
  • 4656f59 Documentation updates by Christian Arnold <christian.arnold@embl.de> 2022-11-29 18:53:49 +0100;
  • 0ccc861 Version bump devel by Christian Arnold <christian.arnold@embl.de> 2022-11-29 13:34:27 +0100;
  • 83d6d42 Bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-11-29 13:33:46 +0100;
  • 00a92df Merging with new devel version, reduced package burden by Christian Arnold <christian.arnold@embl.de> 2022-11-22 12:02:08 +0100;
  • eba3a97 Fixing merge conflict with DESCRIPTION by Christian Arnold <christian.arnold@embl.de> 2022-11-22 12:00:20 +0100;
  • 54ff4d3 reduced package burden by Christian Arnold <christian.arnold@embl.de> 2022-11-22 11:58:28 +0100;
  • b0961c0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:03 -0400;
  • 22ba025 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:03 -0400;
  • da7e6c7 small change by Christian Arnold <carnold@embl.de> 2022-10-14 17:47:58 +0200;
  • 787c4d6 Bugfix for .makeObjectCompatible by Christian Arnold <carnold@embl.de> 2022-10-14 14:45:16 +0200;
  • 1d51211 Bugfixes in visualizeGRN by Christian Arnold <carnold@embl.de> 2022-10-13 18:57:09 +0200;
  • 95ffa62 Vignette updates by Christian Arnold <christian.arnold@embl.de> 2022-10-13 13:16:10 +0200;
  • 6e97d74 misc by Christian Arnold <carnold@embl.de> 2022-10-13 00:47:56 +0200;
  • eaba1ca New version by Christian Arnold <carnold@embl.de> 2022-10-13 00:47:16 +0200;
  • f53eebe Bugfix by Christian Arnold <carnold@embl.de> 2022-10-04 19:29:50 +0200;
  • 47a1b18 Bugfix by Christian Arnold <christian.arnold@embl.de> 2022-10-04 15:27:32 +0200;
  • 2ff0659 (origin/RELEASE_3_15, RELEASE_3_15) version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-09-27 12:50:11 +0200;
  • 7d9442c Small changes by Christian Arnold <christian.arnold@embl.de> 2022-09-27 12:47:15 +0200;
  • 1cb5f93 Attemtping to fix cache issue with vignette + small documenttion updates by Christian Arnold <carnold@embl.de> 2022-09-26 10:17:09 +0200;
  • f6752bc Version update by Christian Arnold <carnold@embl.de> 2022-09-23 16:42:39 +0200;
  • 6c431a9 Code cleanup and careful check for potential issues by Christian Arnold <carnold@embl.de> 2022-09-14 16:19:35 +0200;
  • 6733b72 Version bump by Christian Arnold <carnold@embl.de> 2022-09-14 10:59:35 +0200;
  • f117b09 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:29:44 +0200;
  • b701f0c bug fix: bug fix: allowMissingTFs in filterGRNAndConnectGenes filtered unnecessarily with filterLoops by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:19:40 +0200;
  • ae06991 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:20:32 +0200;
  • a559208 bug fix: bug fix: allowMissingTFs in filterGRNAndConnectGenes filtered unnecessarily with filterLoops by Christian Arnold <christian.arnold@embl.de> 2022-08-24 17:19:40 +0200;
  • 39704b5 Added a new argument to addConnections_TF_peak for special cases by Christian Arnold <christian.arnold@embl.de> 2022-08-11 15:45:45 +0200;
  • 405acd1 Small change in unit tests by Christian Arnold <christian.arnold@embl.de> 2022-08-11 15:14:35 +0200;
  • 0b43b18 Documentation updates for latest changes by Christian Arnold <christian.arnold@embl.de> 2022-07-20 18:21:33 +0200;
  • 825af62 Modified filterData function so that NULL values work for all parameters as documented by Christian Arnold <christian.arnold@embl.de> 2022-07-19 16:12:48 -0500;
  • 68f6107 Version bump devel by Christian Arnold <christian.arnold@embl.de> 2022-07-05 11:21:10 +0200;
  • 0ce1c9b Added maxWidth_nchar_plot to performAllNetworkAnalyses, other small updates by Christian Arnold <christian.arnold@embl.de> 2022-07-05 11:20:59 +0200;
  • 6d7dcf8 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:53:15 +0200;
  • 11ee342 Removed the constraint to only use 50% of the cores max for parallel tasks by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:51:06 +0200;
  • 526fac0 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:15:03 +0200;
  • eda9174 bug fix: Documentation related fixes to eliminate warnings during build by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:10:37 +0200;
  • 6d331b2 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:11:52 +0200;
  • c1c65b2 bug fix: Documentation related fixes to eliminate warnings during build by Christian Arnold <christian.arnold@embl.de> 2022-06-29 14:10:37 +0200;
  • 896bae1 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-06-28 20:23:00 +0200;
  • d07c03b bug fix: Various small important bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-06-28 20:20:40 +0200;
  • 782bb98 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-06-28 20:21:08 +0200;
  • 9fc6563 bug fix: Various small important bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-06-28 20:20:40 +0200;
  • 54801e9 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-06-28 11:37:57 +0200;
  • 1fec7c9 bug fix: Various small importnt bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-06-28 11:28:55 +0200;
  • 2e9288d version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-06-28 11:29:27 +0200;
  • d9c9115 bug fix: Various small importnt bugfixes by Christian Arnold <christian.arnold@embl.de> 2022-06-28 11:28:55 +0200;
  • 30708b2 version bump in release by Christian Arnold <carnold@embl.de> 2022-06-22 23:58:54 +0200;
  • 5adf5a2 Fixed a bug in visualizeGRN causing NULL to be returned when the number of connections exceeded the maximum number of connections to be plotted by Christian Arnold <carnold@embl.de> 2022-06-22 23:53:29 +0200;
  • 02e0d5b version bump in devel by Christian Arnold <carnold@embl.de> 2022-06-22 23:54:04 +0200;
  • 336ddbd Fixed a bug in visualizeGRN causing NULL to be returned when the number of connections exceeded the maximum number of connections to be plotted by Christian Arnold <carnold@embl.de> 2022-06-22 23:53:29 +0200;
  • 8052e47 Bug fix: maxWidth_nchar_plot by Christian Arnold <christian.arnold@embl.de> 2022-05-31 14:02:51 +0200;
  • b239ad9 version bump in devel by Christian Arnold <christian.arnold@embl.de> 2022-05-31 14:03:18 +0200;
  • bdd5834 Bug fix: maxWidth_nchar_plot by Christian Arnold <christian.arnold@embl.de> 2022-05-31 14:02:51 +0200;
  • 1e2d429 version bump in release by Christian Arnold <christian.arnold@embl.de> 2022-05-31 13:55:12 +0200;
  • c9c67a3 bug fix for plotting enrichment functions by Christian Arnold <christian.arnold@embl.de> 2022-04-25 20:15:53 +0200;
  • 9b930c4 Merge branch 'master' of git.bioconductor.org:packages/GRaNIE into main by Christian Arnold <christian.arnold@embl.de> 2022-05-31 13:15:45 +0200;
  • ca4b175 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-27 15:48:10 -0400;
  • 5455455 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-27 15:48:10 -0400;
  • d2a960a minor by Christian Arnold <christian.arnold@embl.de> 2022-04-25 20:15:53 +0200;
  • 06d0da6 minor by Christian Arnold <christian.arnold@embl.de> 2022-04-25 20:15:11 +0200;
  • 6bedd53 Added Bioconductor link to README by Christian Arnold <christian.arnold@embl.de> 2022-04-25 20:04:56 +0200;
  • e00c9c1 Fix for visualization and vignette adjustments by Christian Arnold <christian.arnold@embl.de> 2022-04-25 19:55:56 +0200;
  • 5285597 Added missing pdf suffix for AR classification by Christian Arnold <christian.arnold@embl.de> 2022-04-25 18:49:49 +0200;
  • 0434820 Modified README by Christian Arnold <christian.arnold@embl.de> 2022-04-25 18:35:12 +0200;
  • 440ffdf Post-acceptance changes, part 1 by Christian Arnold <christian.arnold@embl.de> 2022-04-25 17:22:49 +0200;
  • d96af97 Post-acceptance changes, part 1 by Christian Arnold <christian.arnold@embl.de> 2022-04-25 17:21:58 +0200;
  • 8c502bd Major changes, smaller repo, all plot functions can now output plots directly by Christian Arnold <christian.arnold@embl.de> 2022-04-09 05:34:39 +0200;
  • 3683851 Major changes related to Vignette and package size reduction, part 2 by Christian Arnold <christian.arnold@embl.de> 2022-03-26 01:49:08 +0100;
  • 579836f Major changes related to Vignette and package size reduction, part 1 by Christian Arnold <christian.arnold@embl.de> 2022-03-25 21:47:10 +0100;
  • 197f7c9 Attempts to aim to decrease the build time, corrected BiocFileCache code assuming the expiration date is solved, rebuild sysdata.rda to make it smaller by Christian Arnold <christian.arnold@embl.de> 2022-03-22 00:24:45 +0100;
  • d0b1deb first attempt to solve the Windows-specific issue with backslash by Christian Arnold <christian.arnold@embl.de> 2022-03-21 21:57:18 +0100;
  • 220dbfb Deleted logo pictures in man folder to save space by Christian Arnold <christian.arnold@embl.de> 2022-03-21 21:22:09 +0100;
  • 36ad23f Version 0.99.2: Reduced repo size, decreased check time, and other small enhancements for Bioc submission by Christian Arnold <christian.arnold@embl.de> 2022-03-21 21:18:01 +0100;
  • 6044b23 Various small edits by Christian Arnold <christian.arnold@embl.de> 2022-03-19 19:55:41 +0100;
  • 779b250 Several small bugfixes and vignette adjustments related to path-adjustments by Christian Arnold <christian.arnold@embl.de> 2022-03-18 19:45:44 +0100;
  • 98b92cf Added README by Christian Arnold <christian.arnold@embl.de> 2022-03-08 17:27:18 +0100;
  • a52e876 Deleted unnecessary file by Christian Arnold <christian.arnold@embl.de> 2022-03-06 10:17:23 +0100;
  • b258052 Added man-roxygen folder by Christian Arnold <christian.arnold@embl.de> 2022-03-05 19:39:43 +0100;
  • 571f0c6 Temporary fix for biocView for issue with bioc-bot by Christian Arnold <christian.arnold@embl.de> 2022-03-05 19:17:50 +0100;
  • eff474b Temporary fix for biocView for issue with bioc-bot by Christian Arnold <christian.arnold@embl.de> 2022-03-05 19:15:12 +0100;
  • 38096df Trying to fix Bioc bot error by Christian Arnold <christian.arnold@embl.de> 2022-03-05 02:47:07 +0100;
  • 8842204 testthat modifications by Christian Arnold <christian.arnold@embl.de> 2022-03-05 02:39:25 +0100;
  • 39f85de Doc updates and forceRerun adjustments by Christian Arnold <christian.arnold@embl.de> 2022-03-05 02:26:49 +0100;
  • e60c154 Added BiocFileCache by Christian Arnold <christian.arnold@embl.de> 2022-03-05 00:49:47 +0100;
  • 71525c5 further adjustments by Christian Arnold <christian.arnold@embl.de> 2022-03-04 17:31:46 +0100;
  • 896f9b3 further adjustments by Christian Arnold <christian.arnold@embl.de> 2022-03-04 16:30:18 +0100;
  • 59246f9 Bioc adjustments by Christian Arnold <christian.arnold@embl.de> 2022-03-04 15:02:50 +0100;
  • 29c7c77 Added vignettes by Christian Arnold <christian.arnold@embl.de> 2022-03-04 12:17:14 +0100;
  • 66aa0c8 preparing Bioc submission with designated new and clean repo by Christian Arnold <christian.arnold@embl.de> 2022-03-04 12:08:14 +0100;