# GOSemSim
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Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.
## Authors ##
Guangchuang YU, School of Public Health, The University of Hong Kong <http://guangchuangyu.github.io>
## Citation ##
Please cite the following article when using `GOSemSim`:
```
Yu G, Li F, Qin Y, Bo X, Wu Y and Wang S.
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.
Bioinformatics, 2010, 26(7):976-978.
```
URL: [http://bioinformatics.oxfordjournals.org/content/26/7/976.full](http://bioinformatics.oxfordjournals.org/content/26/7/976.full)
## License ##
All source code is copyright, under the Artistic-2.0 License.
For more information on Artistic-2.0 License see [http://opensource.org/licenses/Artistic-2.0](http://opensource.org/licenses/Artistic-2.0)
## Installation ##
To install:
* the latest released version:
`biocLite("GOSemSim")`
* the latest development version:
`devtools::install_github("GuangchuangYu/GOSemSim")`
Find out more at [http://www.bioconductor.org/packages/release/bioc/html/GOSemSim.html](http://www.bioconductor.org/packages/release/bioc/html/GOSemSim.html) and check out the [vignette](http://www.bioconductor.org/packages/release/bioc/vignettes/clusterProfiler/inst/doc/GOSemSim.pdf).
## Documentation ##
To view the vignette of `GOSemSim` installed in your system, start R and enter:
```r
vignette("GOSemSim", package="GOSemSim")
```
More documents can be found in <http://www.bioconductor.org/packages/clusterProfiler>, <http://www.bioconductor.org/packages/DOSE> and <http://guangchuangyu.github.io/tags/gosemsim>.
## Bugs/Feature requests ##
- If you have any, [let me know](https://github.com/GuangchuangYu/GOSemSim/issues). Thx!
