1. GEOfastq
  2. Graph
Graph of GEOfastq
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • * |
  • | *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • * |
  • | *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • 117d51f (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:28:38 -0400;
  • ed1f6d3 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:28:38 -0400;
  • 8305dd5 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:25:34 -0400;
  • 35ff6c9 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:25:34 -0400;
  • f65cbec bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:23:41 -0400;
  • 027d084 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:23:41 -0400;
  • 423a96f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:11:37 +0000;
  • 47a1044 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:11:37 +0000;
  • ed04593 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:05:52 +0000;
  • 866d6af (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:05:52 +0000;
  • afc2483 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:58:34 +0000;
  • 8f1f5a2 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:58:34 +0000;
  • 4dba465 address review comments by Alex Pickering <alexvpickering@gmail.com> 2020-11-25 10:30:22 -0800;
  • bb85ea7 fix expect length for vapply by Alex Pickering <alexvpickering@gmail.com> 2020-11-09 09:25:21 -0800;
  • ee0ac87 fix infinite loops by Alex Pickering <alexvpickering@gmail.com> 2020-11-04 15:44:52 -0800;
  • 362f0db skip downlaod fastq on bioc by Alex Pickering <alexvpickering@gmail.com> 2020-10-30 12:00:52 -0700;
  • 2a3e2a5 Merge branch 'master' of https://github.com/alexvpickering/GEOfastq by Alex Pickering <alexvpickering@gmail.com> 2020-10-30 11:27:37 -0700;
  • 443167e bump version by Alex Pickering <alexvpickering@gmail.com> 2020-10-30 11:25:55 -0700;
  • e268097 remove Rproj file from git by Alex Pickering <alexvpickering@gmail.com> 2020-10-27 19:50:56 -0700;
  • b7cb116 fix Authors@R typo by Alex Pickering <alexvpickering@gmail.com> 2020-10-27 17:20:54 -0700;
  • 86b06ca lengthen description and use Authors@R specification by Alex Pickering <alexvpickering@gmail.com> 2020-10-27 17:06:17 -0700;
  • 40f6e12 remove renv and docker stuff by Alex Pickering <alexvpickering@gmail.com> 2020-10-27 16:21:25 -0700;
  • 39f0f80 trying to fix build errors by Alex Pickering <alexvpickering@gmail.com> 2020-10-27 16:06:13 -0700;
  • d063565 bump version and NEWS by Alex Pickering <alexvpickering@gmail.com> 2020-10-26 16:39:56 -0700;
  • d56c21e add unit tests; passed BiocCheck by Alex Pickering <alexvpickering@gmail.com> 2020-10-26 16:29:03 -0700;
  • dca4879 add vignette; fixes for submission by Alex Pickering <alexvpickering@gmail.com> 2020-10-26 14:59:32 -0700;
  • 7e26e5e Merge branch 'master' of https://github.com/alexvpickering/GEOfastq by Alex Pickering <alexvpickering@gmail.com> 2020-10-15 15:43:11 -0700;
  • 7942a3f don't warn if dir exists by Alex Pickering <alexvpickering@gmail.com> 2020-10-15 15:33:04 -0700;
  • d34ea5f fix empty GSM text values by Alex Pickering <alexvpickering@gmail.com> 2020-10-11 08:48:36 -0700;
  • e0b636c return NULL silently for GSMs without runs (e.g. on dbGAP for privacy) by Alex Pickering <alexvpickering@gmail.com> 2020-10-10 06:41:34 -0700;
  • 12025d8 get_dldir works for ERR (ENA original submissions) by Alex Pickering <alexvpickering@gmail.com> 2020-09-25 14:24:49 -0700;
  • 9c582ba remove parallel ftp from get_fastqs; add dl check for aspera by Alex Pickering <alexvpickering@gmail.com> 2020-09-24 09:12:01 -0700;
  • bb396c8 bump version by Alex Pickering <alexvpickering@gmail.com> 2020-09-23 16:38:03 -0700;
  • 589408a change gse_dir to data_dir by Alex Pickering <alexvpickering@gmail.com> 2020-09-23 14:15:35 -0700;
  • 55a3bbf refactor so that GSE text can be kept by Alex Pickering <alexvpickering@gmail.com> 2020-09-23 11:20:39 -0700;
  • e7ca981 add fix_characteristics from GEOdb by Alex Pickering <alexvpickering@gmail.com> 2020-09-22 12:58:02 -0700;
  • f2feddb add max_rate argument for aspera by Alex Pickering <alexvpickering@gmail.com> 2020-09-22 12:57:55 -0700;
  • 35757ea change data_dir to gse_dir by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 16:10:16 -0700;
  • 8405ed1 add max.workers arguments by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 13:47:49 -0700;
  • e8ffa83 fix docs by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 13:37:02 -0700;
  • 4e5df34 update docker docs by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 12:01:21 -0700;
  • d704c5d update R version; setup dockerhub by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 11:48:00 -0700;
  • a86bea1 merge data_dir/gse_name for consistency with drugseqr::run_kallisto_bulk by Alex Pickering <alexvpickering@gmail.com> 2020-09-21 09:40:55 -0700;
  • a0dafe7 bug fixes by Alex Pickering <alexvpickering@gmail.com> 2020-09-18 16:56:03 -0700;
  • 2e6ce3c better error handling; skip ftp if already have by Alex Pickering <alexvpickering@gmail.com> 2020-09-18 16:41:17 -0700;
  • 8029624 return dl status; prevent too many processes; fix rbind by Alex Pickering <alexvpickering@gmail.com> 2020-09-18 14:25:14 -0700;
  • 8ee0047 parallelize retrieval of srp_meta by Alex Pickering <alexvpickering@gmail.com> 2020-09-18 11:15:35 -0700;
  • 1937728 Merge branch 'master' of https://github.com/alexvpickering/GEOfastq by Alex Pickering <alexvpickering@gmail.com> 2020-08-20 17:25:45 -0700;
  • 2862be9 cleanup processing of GSM record by Alex Pickering <alexvpickering@gmail.com> 2020-08-20 17:25:26 -0700;
  • b2c46e2 fix multi-file ftp downloads by Alex Pickering <alexvpickering@gmail.com> 2020-04-06 11:32:55 -0400;
  • a8ddebd allow ftp by Alex Pickering <alexvpickering@gmail.com> 2020-04-06 11:30:49 -0400;
  • fcb951b make docker run volume more general by Alex Pickering <alexvpickering@gmail.com> 2019-10-25 12:01:09 -0400;
  • 00b7018 switch from packrat to renv; fix ascp PATH; init docker by Alex Pickering <alexvpickering@gmail.com> 2019-10-24 08:44:26 -0400;
  • c2491e7 fix README by Alex Pickering <alexvpickering@gmail.com> 2019-10-23 10:14:42 -0400;
  • 968d032 update README by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 09:52:26 -0400;
  • b26a7c8 fix prefix error by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 09:41:00 -0400;
  • 033487a fix readme namespacing by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 09:38:51 -0400;
  • a08be3a init packrat and installation instructions by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 09:37:03 -0400;
  • b50d0a8 initialize functionality and README by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 09:32:01 -0400;
  • b2721c0 first commit by Alex Pickering <alexvpickering@gmail.com> 2019-10-18 08:20:02 -0400;