Name Mode Size
GDCRNATools-package.R 100644 1 kb
gdcCEAnalysis.R 100644 9 kb
gdcClinical.R 100644 12 kb
gdcCorPlot.R 100644 3 kb
gdcDEAnalysis.R 100644 9 kb
gdcDEGVisulization.R 100644 11 kb
gdcEnrichmentAnalysis.R 100644 7 kb
gdcEnrichmentPlots.R 100644 6 kb
gdcExportNetwork.R 100644 2 kb
gdcFilterSamples.R 100644 2 kb
gdcIDConversion.R 100644 1 kb
gdcKMPlot.R 100644 5 kb
gdcMatchSamples.R 100644 2 kb
gdcParseMetadata.R 100644 5 kb
gdcRNADownload.R 100644 9 kb
gdcRNAMerge.R 100644 4 kb
gdcShinyPlot.R 100644 7 kb
gdcSurvivalAnalysis.R 100644 6 kb
gdcVoomNormalization.R 100644 2 kb
sysdata.rda 100644 3,244 kb
### *GDCRNATools* - an R/Bioconductor package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC * **A tutorial is avaialable here: [GDCRNATools Wiki page](** * **If you use `GDCRNATools` in your published research, please cite:** Li, R., Qu, H., Wang, S., Wei, J., Zhang, L., Ma, R., Lu, J., Zhu, J., Zhong, W., and Jia, Z. (2018). GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC. Bioinformatics 34, 2515-2517. * **Please add my WeChat: rli012 or email to if you have further questions.** *** The [Genomic Data Commons (GDC)]( maintains standardized genomic, clinical, and biospecimen data from National Cancer Institute (NCI) programs including [The Cancer Genome Atlas (TCGA)]( and [Therapeutically Applicable Research To Generate Effective Treatments (TARGET)](, It also accepts high quality datasets from non-NCI supported cancer research programs, such as genomic data from the [Foundation Medicine]( `GDCRNATools` is an R/Bioconductor package which provides a standard, easy-to-use and comprehensive pipeline for downloading, organizing, and integrative analyzing RNA expression data in the GDC portal with an emphasis on deciphering the lncRNA-mRNA related ceRNA regulatory network in cancer.