Name Mode Size
..
AllEvents_RNASeq.Rd 100644 1 kb
AllEvents_RNASeq_MP.Rd 100644 1 kb
ArrayDatamultipath.Rd 100644 1 kb
ArraysData.Rd 100644 1 kb
CDFfromGTF.Rd 100644 2 kb
CDFfromGTF_Multipath.Rd 100644 2 kb
CreateExSmatrix.Rd 100644 1 kb
EventDetection.Rd 100644 1 kb
EventDetectionMultipath.Rd 100644 1 kb
EventDetection_transcriptome.Rd 100644 2 kb
EventPointer.Rd 100644 2 kb
EventPointer_Bootstraps.Rd 100644 2 kb
EventPointer_IGV.Rd 100644 3 kb
EventPointer_RNASeq.Rd 100644 1 kb
EventPointer_RNASeq_IGV.Rd 100644 1 kb
EventPointer_RNASeq_TranRef.Rd 100644 1 kb
EventPointer_RNASeq_TranRef_IGV.Rd 100644 2 kb
EventXtrans.Rd 100644 1 kb
Events_ReClassification.Rd 100644 2 kb
FindPrimers.Rd 100644 6 kb
Fit.Rd 100644 0 kb
GetPSI_FromTranRef.Rd 100644 2 kb
InternalFunctions.Rd 100644 10 kb
MyPrimers.Rd 100644 0 kb
MyPrimers_taqman.Rd 100644 1 kb
PSI_Statistic.Rd 100644 1 kb
PSIss.Rd 100644 0 kb
PrepareBam_EP.Rd 100644 2 kb
Protein_Domain_Enrichment.Rd 100644 2 kb
ResulTable.Rd 100644 1 kb
SF_Prediction.Rd 100644 1 kb
SG_RNASeq.Rd 100644 1 kb
SG_reclassify.Rd 100644 1 kb
TxD.Rd 100644 0 kb
getbootstrapdata.Rd 100644 1 kb
README.md
# EventPointer [![platforms](http://bioconductor.org/shields/availability/3.8/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![build](http://bioconductor.org/shields/build/release/bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![updated](http://bioconductor.org/shields/lastcommit/release/bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![yearsBioC](http://bioconductor.org/shields/years-in-bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) *EventPointer* is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3',...,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation. ![**Figure 1.** EventPointer pipeline ](https://github.com/jpromeror/EventPointer/blob/master/vignettes/Figure1.png) # Installation EventPointer can be installed from Bioconductor using the BiocManager package: ```{r, eval=FALSE} if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") library(BiocManager) BiocManager::install("EventPointer") ```