Name Mode Size
..
AllEvents_RNASeq.R 100644 1 kb
AllEvents_RNASeq_MP.R 100644 1 kb
ArrayDatamultipath.R 100644 1 kb
ArraysData.R 100644 1 kb
AuxFunctions.R 100644 197 kb
CDFfromGTF.R 100644 19 kb
CDFfromGTF_Multipath.R 100644 19 kb
EventDetection.R 100644 7 kb
EventDetectionMultipath.R 100644 9 kb
EventPointer.R 100644 17 kb
EventPointer_IGV.R 100644 15 kb
EventPointer_RNASeq.R 100644 8 kb
EventPointer_RNASeq_IGV.R 100644 4 kb
EventPointer_RNASeq_TranRef.R 100644 6 kb
EventXtrans.R 100644 1 kb
EventsGTFfromTrancriptomeGTF.R 100644 13 kb
FindPrimers.R 100644 9 kb
GetPSI_FromTranRef.R 100644 6 kb
MyPrimers.R 100644 0 kb
MyPrimers_taqman.R 100644 0 kb
PSI_Statistic.R 100644 4 kb
PSIss.R 100644 0 kb
PrepareBam_EP.R 100644 4 kb
SG_RNASeq.R 100644 0 kb
getbootstrapkallisto.R 100644 4 kb
README.md
# EventPointer [![platforms](http://bioconductor.org/shields/availability/3.8/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![build](http://bioconductor.org/shields/build/release/bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![updated](http://bioconductor.org/shields/lastcommit/release/bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) [![yearsBioC](http://bioconductor.org/shields/years-in-bioc/EventPointer.svg)](http://bioconductor.org/packages/release/bioc/html/EventPointer.html) *EventPointer* is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3',...,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation. ![**Figure 1.** EventPointer pipeline ](https://github.com/jpromeror/EventPointer/blob/master/vignettes/Figure1.png) # Installation EventPointer can be installed from Bioconductor using the BiocManager package: ```{r, eval=FALSE} if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") library(BiocManager) BiocManager::install("EventPointer") ```