Name Mode Size
R 040000
data 040000
man 040000
tests 040000
vignettes 040000
DESCRIPTION 100644 1 kb
NAMESPACE 100644 1 kb 100644 0 kb 100644 1 kb
# EasyCellType EasyCellType is a R package developed to automatically examine the input marker lists obtained from existing software such as Seurat over the cell marker databases. Two quantification approaches are provided to annotate cell types: Gene set enrichment analysis (GSEA) and a fisher exact test combining with expression significance. The package generates straight-forward visualization of the test results, which help the researchers to understand the results and pick the optimal annotations. # Installation ``` library(devtools) devtools::install_github("rx-li/EasyCellType") ```