1. DiscoRhythm
  2. Graph
Graph of DiscoRhythm
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  • 6dad50c (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:09:19 -0400;
  • 239280c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:09:19 -0400;
  • 4c46471 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:37 -0400;
  • 9cd5a0d (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:37 -0400;
  • 944612b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:54:31 +0000;
  • 49ed0c7 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:54:30 +0000;
  • b272edf (origin/RELEASE_3_14, RELEASE_3_14) version bump in release by Matthew Carlucci <matt.carlucci.96@gmail.com> 2022-03-07 17:07:53 -0500;
  • 96a4439 bug fix: Use session$reload to replace custom js reset function which shinyjs 2.1 would error with by Matthew Carlucci <matt.carlucci.96@gmail.com> 2022-03-07 16:21:33 -0500;
  • c17e150 version bump in devel by Matthew Carlucci <matt.carlucci.96@gmail.com> 2022-03-07 16:22:04 -0500;
  • ddf2cbf bug fix: Use session$reload to replace custom js reset function which shinyjs 2.1 would error with by Matthew Carlucci <matt.carlucci.96@gmail.com> 2022-03-07 16:21:33 -0500;
  • 74e90e8 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:50:49 +0000;
  • 5c6091e bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:50:49 +0000;
  • c11d4ac bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:42:40 +0000;
  • 1ea451c (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:42:40 +0000;
  • 3b660f1 Fix error modal handling of original R call by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-12-01 15:42:55 -0500;
  • 0267fb4 Allow single row dataset upload by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-12-01 14:49:38 -0500;
  • 4411ca1 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:44:44 -0400;
  • 59e8f79 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:44:44 -0400;
  • b516c12 (origin/RELEASE_3_11, RELEASE_3_11) Fix kableExtra vignette error by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-09-29 13:54:03 -0400;
  • fb373d3 Fix vignette kableExtra error by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-09-29 13:39:42 -0400;
  • 5122504 Improve PCA for low feature number datasets by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-22 14:38:34 -0400;
  • c9efcad Finish cherry-picking of bug fixes for release by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-09 15:43:23 -0400;
  • fb3ef0f Cherry-pick avoid biocgenerics by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-09 10:29:43 -0400;
  • cd27898 Cherrypick fix crashing error by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-06-30 12:38:35 -0400;
  • 64afbd6 Allow for removal of file size restriction in discoApp by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-09 15:49:02 -0400;
  • a75d552 Use direct calls to colData by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-09 15:43:23 -0400;
  • d714613 Avoid import of BiocGenerics in application by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-07-09 10:29:43 -0400;
  • 2c9f9aa Fix crashing error introduced by R 4.0.1 by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-06-30 12:38:35 -0400;
  • 0bf2156 Always use system bioc version for vignette links by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-06-11 13:43:13 -0400;
  • 1ce6070 Move ggplot theme to package internals by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-06-11 13:41:13 -0400;
  • 06ac79d bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:25:34 +0000;
  • de0ab82 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:25:34 +0000;
  • fb3d89a Increment docsURL to release 3.11 by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-04-22 17:57:41 -0400;
  • c5612a2 Update citation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-04-15 14:59:34 -0400;
  • 6cc440c Improve usability of zip and Rmd reports by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-02-25 15:10:27 -0500;
  • f18e67c Move color palette to package internals by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-02-25 13:38:33 -0500;
  • 96096f7 Fix UI bug preventing job submission under some conditions by Matthew Carlucci <matt.carlucci.96@gmail.com> 2020-01-16 16:55:50 -0500;
  • 75f366a Add relevant publication information by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-12-04 14:23:23 -0500;
  • e42ace9 Change Haohan's email address by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-11-29 10:13:05 -0500;
  • 2660c2f (origin/RELEASE_3_10, RELEASE_3_10) Fix rose plot and data.table warnings by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-11-06 14:18:19 -0500;
  • 0afc808 Fix rose plot and data.table warnings by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-11-06 14:18:19 -0500;
  • fe82adf bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:33 -0400;
  • f42b2fb bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:37 -0400;
  • 9ea892b Formatting for BiocCheck and bump to 1.1.1 by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-27 11:09:50 -0400;
  • 29dc960 Minor UI modifications by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-26 14:55:13 -0400;
  • 480a662 Unify zip archive and interactive ODA outputs by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-26 14:52:11 -0400;
  • 66cff92 Exclude indata from RDS in zip archives to keep their size small by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-26 09:34:58 -0400;
  • 8167316 Incorporate comments from Gabriel and other changes by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-25 16:12:57 -0400;
  • 3a24dd8 Vignette update for new report execution mode by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-24 14:05:42 -0400;
  • 46ac4a2 Integrate session archiving into new oscillation detection job submission and email feature (no docs updates yet) by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-20 15:13:36 -0400;
  • 5e5aa64 Add sidenote to PC Fits text by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-18 11:40:29 -0400;
  • 3e076f4 Include NEWS in app, other docs updates by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-09 16:47:58 -0400;
  • de77981 Use peak amplitude in Cosinor by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-09 15:49:55 -0400;
  • 62801e1 Minor update to documentation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-09 15:48:54 -0400;
  • 3f3877c Remove reactive object download and implement zip archiving by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-09 15:45:51 -0400;
  • cbb5fa9 Incorporate most of the comments/modifications from Karolis by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-06 16:49:52 -0400;
  • cb6dc34 First draft addressing reviewer comments in vignette by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-09-06 10:16:02 -0400;
  • 5a78072 Remove method overlap p-value to avoid misleading interpretations by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-29 14:17:40 -0400;
  • 2e32f2f Clarify period detection usage and behaviour with in-app documentation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-29 14:15:31 -0400;
  • 0e2554c Fix duplicate row names when present in input dataset by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-29 11:26:05 -0400;
  • 940c6b7 Subset output metadata of discoRepAnalysis by column name instead of position by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-29 11:25:01 -0400;
  • be302fb Fix bug in runtime approximation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-16 10:14:05 -0400;
  • a41fa87 Put CSS directly in batch execution Rmd by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-13 12:23:26 -0400;
  • 5501cf3 Add direct upload alternative for metadata by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-09 12:47:39 -0400;
  • c76ee45 Update man for cosinor and allow use by discoODAs with missing values by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-09 10:08:26 -0400;
  • db07c5a Merge branch 'master' of github.com:matthewcarlucci/DiscoRhythm into dev by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-09 09:53:55 -0400;
  • 71e6c0f made cosinor work with NA values present (#2) by Karolis Koncevičius <karolis.koncevicius@gmail.com> 2019-08-09 16:52:31 +0300;
  • 6e5eff9 Add checkbox to allow outliers in the correlation heatmap by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-08 11:35:09 -0400;
  • c907c41 Merge branch 'master' into dev by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-08 10:42:31 -0400;
  • 6d34bee Fix bug where sample correlation plots display column numbers instead of names by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-07 17:51:41 -0400;
  • 0508217 Add more details to discoODAs documentation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-07 15:47:22 -0400;
  • da3b2e1 Add widget for specifying number of PCs to plot in Period Detection by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-06 13:54:42 -0400;
  • 2549edb Fix bug to include row identifiers for discoODAs output by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-06 13:19:39 -0400;
  • f0992f4 Fix tooltips by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-08-06 13:14:18 -0400;
  • 92a79d7 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:28 -0400;
  • 6986d78 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:15 -0400;
  • f5c3f60 Update public server URL by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-29 16:27:24 -0400;
  • c2a1532 Write intermediate report files to same directory as output report by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-29 12:21:40 -0400;
  • 8203212 Add parallelization and port options to discoApp by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-26 17:11:55 -0400;
  • 9a88b87 Update docker usage documentation by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-25 14:32:45 -0400;
  • 1111e3f Remove shinyalert by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 11:44:50 -0400;
  • 6d77013 Update README.md by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:29:52 -0400;
  • 3fb7576 Bump to v0.99.4 by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:11:41 -0400;
  • a83f818 Merge branch 'dev' by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:09:13 -0400;
  • 2b2dcf6 Add docker usage by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:06:18 -0400;
  • 65420d3 Bug fix by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:01:59 -0400;
  • 49baa5f Update NEWS by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:01:50 -0400;
  • d4795f7 Include docker usage by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:01:29 -0400;
  • 36c7db7 Require latest (v1.2) MetaCycle by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:01:08 -0400;
  • 203c35f Text modifications by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 10:00:17 -0400;
  • 058fcf2 Load DiscoRhythm by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 09:59:39 -0400;
  • 6376ba9 Remove explicit current working directory setting in report render by Matthew Carlucci <matt.carlucci.96@gmail.com> 2019-04-24 09:58:54 -0400;
  • 94798ff Merge pull request <a href="#1">#1</a> from PoGibas/suggestions by matthewcarlucci <matthewcarlucci@users.noreply.github.com> 2019-04-24 09:51:12 -0400;
  • 81b4f6d Re-build man files by PoGibas <povilasgibas@gmail.com> 2019-04-23 21:13:40 +0300;
  • aad8988 Returned vignettes with exported BiocStyle:: functions by PoGibas <povilasgibas@gmail.com> 2019-04-23 20:24:34 +0300;
  • 4ecfed2 discoParseMeta returns bad samples names by PoGibas <povilasgibas@gmail.com> 2019-04-23 20:07:55 +0300;
  • 9eac03c Replaced reshape2::melt with data.table::melt by PoGibas <povilasgibas@gmail.com> 2019-04-23 20:05:45 +0300;
  • e6b2ab1 Rollback to original required R version by PoGibas <povilasgibas@gmail.com> 2019-04-23 20:05:27 +0300;
  • 503ddc9 Will try to remove white spaces if regex doesn't match by PoGibas <povilasgibas@gmail.com> 2019-04-23 19:33:14 +0300;
  • a6506a0 Added unit tests to check for correct input by PoGibas <povilasgibas@gmail.com> 2019-04-23 19:27:19 +0300;