Name Mode Size
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DifferentialRegulation.R 100644 12 kb
DifferentialRegulation_bulk.R 100644 11 kb
MCMC_ECs.R 100644 36 kb
MCMC_bulk_EC.R 100644 19 kb
MCMC_functions.R 100644 5 kb
RcppExports.R 100644 2 kb
compute_PB_counts.R 100644 10 kb
load_EC.R 100644 8 kb
load_USA.R 100644 5 kb
load_bulk_EC.R 100644 5 kb
load_bulk_US.R 100644 3 kb
plot_bulk_pi.R 100644 4 kb
plot_bulk_traceplot.R 100644 3 kb
plot_pi.R 100644 6 kb
plot_traceplot.R 100644 4 kb
roxygen_tags.R 100644 2 kb
README.md
# DifferentialRegulation: a method to discover differentially regulated genes between conditions <img src="inst/extdata/DifferentialRegulation.png" width="200" align="right"/> `DifferentialRegulation` is a method for detecting differentially regulated genes between two groups of samples (e.g., healthy vs. disease, or treated vs. untreated samples), by targeting differences in the balance of spliced and unspliced mRNA abundances, obtained from single-cell RNA-sequencing (scRNA-seq) data. Check the vignettes for a description of the main conceptual and mathematical aspects, as well as usage guidelines. A pre-print will follow shortly (~summer 2022). ## Bioconductor installation `DifferentialRegulation` is available on [Bioconductor](https://bioconductor.org/packages/DifferentialRegulation) and can be installed with the command: ``` r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("DifferentialRegulation") ``` ## Vignette The vignette illustrating how to use the package can be accessed on [Bioconductor](https://bioconductor.org/packages/DifferentialRegulation) or from R via: ``` r vignette("DifferentialRegulation") ``` or ``` r browseVignettes("DifferentialRegulation") ```