1. DiffBind
  2. Graph
Graph of DiffBind
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  • b8c5bbc (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:02 -0400;
  • 00284e8 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:02 -0400;
  • 5846014 (origin/RELEASE_3_17, RELEASE_3_17) merge by Rory Stark <rory.stark@cruk.cam.ac.uk> 2023-08-30 13:24:15 +0100;
  • 4f5ff3a change Rory email by Rory Stark <rory.stark@cruk.cam.ac.uk> 2023-08-25 15:29:09 +0100;
  • df0227e Change Rory email by Rory Stark <rory.stark@cruk.cam.ac.uk> 2023-08-25 15:16:19 +0100;
  • a7e1f1b bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:02 -0400;
  • 8d49ab2 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:02 -0400;
  • 251af94 change enhances to suggests by Randall Stark <rory.stark@cruk.cam.ac.uk> 2023-04-11 12:27:47 +0100;
  • 4af2c57 fix handling of Peaks when Counts specified by Randall Stark <rory.stark@cruk.cam.ac.uk> 2023-01-12 12:45:39 +0000;
  • 846ee10 (origin/RELEASE_3_16, RELEASE_3_16) fix handling of Counts and Peaksof PEaks when Counts specified by Randall Stark <rory.stark@cruk.cam.ac.uk> 2023-01-12 12:26:55 +0000;
  • e3893ab add option to return ggplot in dba.plotVolcano by Randall Stark <rory.stark@cruk.cam.ac.uk> 2023-01-06 16:59:34 +0000;
  • cbb159b rollover bugfixes from release by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-12-07 17:08:44 +0000;
  • a165856 fixes relating to pre-defined counts by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-12-07 16:45:14 +0000;
  • b1cfa94 rollover bugfixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-12-07 14:30:49 +0000;
  • 599eeb7 fix for adding counts + test by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-12-01 17:00:53 +0000;
  • 248be81 rollover mc.cores bugfix by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-11-13 13:25:04 +0000;
  • e207daa address issue in handling mc.cores by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-11-12 14:56:06 +0000;
  • eb30a52 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:17 -0400;
  • 0a29b13 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:17 -0400;
  • 16392c9 fix bug when adding counts explicitly by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-10-24 17:22:22 +0100;
  • 328221e Remove Gord Brown email by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-10-04 15:41:58 +0100;
  • c1ce415 (origin/RELEASE_3_15, RELEASE_3_15) remove Gord Brown email by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-10-04 14:50:40 +0100;
  • 2eed754 rollup bugfixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-09-09 17:20:56 +0100;
  • 29033ee update help page for dba() regarding config by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-09-09 17:20:19 +0100;
  • a8e05c0 more robust handling of config by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-09-09 16:13:36 +0100;
  • d887066 rollup is.na fixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-08 17:52:41 +0100;
  • 419a836 is.na fixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-08 17:51:53 +0100;
  • 56fab6f rollover bigfixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-08 17:24:03 +0100;
  • 0d366eb bugfixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-08 14:00:31 +0100;
  • 6cb3559 rollup bugfixes from release by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-02 19:13:07 +0100;
  • 4608e20 Address parallelisation issues + duplicate bam files by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-08-01 17:12:30 +0100;
  • 6fd31d9 Rhtslib patch, vignette update, roll up bugfix by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-05-13 14:08:58 +0100;
  • c64798a renormalize after black/greylist by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-05-11 16:13:09 +0100;
  • 844ab98 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:01 +0000;
  • a2680b2 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:00 +0000;
  • 3ba414c plot Profile labels and update NEWS by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-04-25 11:42:10 +0100;
  • 79f9709 (origin/RELEASE_3_14, RELEASE_3_14) more plotProfile label tweaks by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-24 16:30:59 +0000;
  • fee4daa update core by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-22 16:44:27 +0000;
  • 822cbe1 roll up fixes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-22 16:30:21 +0000;
  • 7e24840 update data objects by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-22 16:11:32 +0000;
  • 59542f8 bugfixes - dissapearing FRiP and profile labels by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-22 12:15:13 +0000;
  • 51b41c6 fix bug when consensus has exactly one peak by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-18 21:13:36 +0000;
  • aa1458e add warning if SampleIDs repeated by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-04 15:42:19 +0000;
  • 76ade12 bug rollup and new tests in GenerateDataFiles script by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-02 11:12:36 +0000;
  • 2ac58ca bugfix when passing in peaks to dba.count by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-02-01 12:42:55 +0000;
  • f30e1d6 cleanup Called fixes and add test by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-20 19:15:31 +0000;
  • 7599763 cleanup Called fixes and add test by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-20 18:57:35 +0000;
  • 65e94fa backwards compatiblity for Called fix by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-18 18:09:23 +0000;
  • 9c31c43 roll-up fixes: blacklist, parallel, spikein normalization, Called by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-17 19:24:18 +0000;
  • 07152a6 issues in parallel, spikein normalization, Called by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-17 18:35:47 +0000;
  • 01da1d5 fix error/warnings in dba.blacklist when non-matching chr names by Randall Stark <rory.stark@cruk.cam.ac.uk> 2022-01-13 17:32:43 +0000;
  • 167a307 typos in vignette and x-axis label in plotVolcano by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-09 12:53:20 +0000;
  • 5cf758f typos in vignette and x-axis label in plotVolcano by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-09 12:52:35 +0000;
  • d5bef6c man page update and set serial on windows by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-07 15:25:20 +0000;
  • 1f33577 man page update and set serial on windows by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-07 15:24:24 +0000;
  • 46882c9 Fix version info in startup by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-01 17:02:17 +0000;
  • 42ab53c Fix version info in startup by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-12-01 17:01:51 +0000;
  • d027e79 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:30 +0000;
  • c2039d2 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:30 +0000;
  • 4e68147 roll up bug fixes and minor updates by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-09-14 15:47:14 +0100;
  • bf9b04a (origin/RELEASE_3_13, RELEASE_3_13) backport minor fix by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-09-13 16:04:43 +0100;
  • 9bc9a71 minor bug, warning, vignette changes by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-09-13 15:01:37 +0100;
  • 67bf9a6 deal with no parallelPackage in config record by Randall Stark <rory.stark@cruk.cam.ac.uk> 2021-08-25 12:44:57 +0100;
  • 848e73a fix issue with intersectMode and add inter.feature by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-08-06 20:56:57 +0100;
  • f373208 fix bFlip issues and remove gc calls by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-07-06 12:35:27 +0100;
  • 766c8c1 fix issue with blacklist after counting with non-default contrast by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-06-28 16:34:39 +0100;
  • 41144ec recalc FDR if fold is not 0 and bug/performance fixes by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-06-28 16:31:59 +0100;
  • 25d1cb0 fix new sprintf warning and update package help page by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-06-03 17:11:13 +0100;
  • f74cea2 recompute stats when fold is specified by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-05-26 14:19:34 +0100;
  • 484cadd replace vignette figure with better version by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-05-24 17:37:41 +0100;
  • f7d5a24 replace vignette figure with better version by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-05-24 17:32:28 +0100;
  • bb514d0 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:59 +0000;
  • dddc771 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:59 +0000;
  • f7e1bd9 update docs: vignette, man page, news etc by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-05-18 16:35:40 +0100;
  • 07075ed update docs and fix blacklist bug by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-05-17 20:29:38 +0100;
  • 6b14b52 config options + doc by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-04-29 16:39:11 +0100;
  • d898a27 fix 1 warning and 1 note by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-04-28 17:34:01 +0100;
  • 4e90de2 update docs and add scores functionality to dba.plotProfile by Rory Stark <rory.stark@cruk.cam.ac.uk> 2021-04-26 20:43:50 +0100;
  • f823495 update dba.plotProfileDemo.Rmd by Rory Stark <github@starkhome.com> 2021-04-26 12:00:38 +0100;
  • dd6a7a0 roll-up fixes - mixed end counting - expose dba.plotProfile by Rory Stark <github@starkhome.com> 2021-04-26 11:19:07 +0100;
  • 9c4e998 (origin/RELEASE_3_12, RELEASE_3_12) bGain or bLoss = TRUE triggers report-based object by Rory Stark <github@starkhome.com> 2021-03-22 17:19:01 +0000;
  • 000da1d data objects in sync with 3.0.14 by Rory Stark <github@starkhome.com> 2021-03-11 17:20:58 +0000;
  • 0c2c1d6 fix for after filter by Rory Stark <github@starkhome.com> 2021-03-11 14:57:34 +0000;
  • 5b1f0ef warnings for empty consensus and windows parallel by Rory Stark <github@starkhome.com> 2021-02-03 15:56:39 +0000;
  • ccfe4da fix for counts/cocentraiton in reports by Rory Stark <github@starkhome.com> 2021-01-27 17:06:53 +0000;
  • ef1b43f fix warning and roll-up changes by Rory Stark <github@starkhome.com> 2021-01-14 17:39:21 +0000;
  • bc3c01b update edit date in vignette by Rory Stark <github@starkhome.com> 2021-01-14 14:50:16 +0000;
  • 1851ebd fixes: link in vignette, precision in report, filter=0 in count by Rory Stark <github@starkhome.com> 2021-01-14 14:36:46 +0000;
  • 5bf8c2a check for Windows and disable parallel greylisting by Rory Stark <github@starkhome.com> 2021-01-12 17:47:14 +0000;
  • 2f9e88b do not attempt greylists if no controls by Rory Stark <github@starkhome.com> 2020-12-24 13:10:35 +0000;
  • a86313a blacklist bug fixes by Rory Stark <github@starkhome.com> 2020-12-05 16:20:09 +0000;
  • c7b4bcb roll up bugfixes, intro plotProfile by Rory Stark <github@starkhome.com> 2020-11-21 15:58:00 +0000;
  • f1ec267 change error to message in dba.blacklist and improve parallelization by Rory Stark <github@starkhome.com> 2020-11-21 12:09:19 +0000;
  • 59c9681 sync changes with release and add plotProfile.R by Rory Stark <github@starkhome.com> 2020-11-18 13:43:37 +0000;
  • 1a510bf check rownames in dba.analyze by Rory Stark <github@starkhome.com> 2020-11-16 18:00:52 +0000;
  • bd8cc66 fix bug when counting with consensus peakset by Rory Stark <github@starkhome.com> 2020-11-12 17:38:05 +0000;
  • 7a6759f changes to filtering and bSubControl dba.count and remove csaw for RLE by Rory Stark <github@starkhome.com> 2020-11-09 23:35:33 +0000;
  • 2c5ea61 fixes when no peaks specified by Rory Stark <github@starkhome.com> 2020-11-08 19:12:49 +0000;
  • d85507f export DBA_BLACKLIST_HG38 by Rory Stark <github@starkhome.com> 2020-11-07 15:12:03 +0000;
  • 6a7b881 Update DiffBind3 help page with defaults by Rory Stark <github@starkhome.com> 2020-10-29 15:53:26 +0000;