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+% Generated by roxygen2: do not edit by hand |
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+% Please edit documentation in R/visualise_chromatograms.R |
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+\name{plotAlignmentPath}
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+\alias{plotAlignmentPath}
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+\title{Visualize alignment path through similarity matrix}
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+\usage{
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+plotAlignmentPath(AlignObjOutput) |
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+} |
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+\description{
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+Plot aligned path through the similarity matrix. Reference run has indices on X-axis, eXp run has them on Y-axis. |
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+In getAlignObjs function, objType must be set to medium. |
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+} |
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+\examples{
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+library(lattice) |
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+dataPath <- system.file("extdata", package = "DIAlignR")
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+runs <- c("hroest_K120809_Strep0\%PlasmaBiolRepl2_R04_SW_filt",
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+ "hroest_K120809_Strep10\%PlasmaBiolRepl2_R04_SW_filt") |
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+AlignObjOutput <- getAlignObjs(analytes = "QFNNTDIVLLEDFQK_3", runs, dataPath = dataPath, |
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+ objType = "medium") |
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+plotAlignmentPath(AlignObjOutput) |
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+} |
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+\author{
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+Shubham Gupta, \email{shubh.gupta@mail.utoronto.ca}
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+ |
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+ORCID: 0000-0003-3500-8152 |
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+ |
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+License: (c) Author (2019) + MIT |
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+Date: 2019-12-13 |
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+} |
