git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEsubs@123204 bc3139a8-67e5-0310-9ffc-ced21a209358
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@@ -58,7 +58,7 @@ if (.Platform[['OS.type']] == 'windows') |
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} |
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``` |
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-Now the packake, as well as the toy-data can be loaded as follows: |
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+Now the package, as well as the toy-data can be loaded as follows: |
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```{r eval=FALSE, echo=TRUE} |
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library('DEsubs') |
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@@ -88,7 +88,7 @@ load(system.file('extdata', 'data.RData', package='DEsubs')) |
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\newpage |
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## 2. User Input |
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-DEsubs accepts RNA-seq expression control-case profile data. The following |
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+DEsubs accepts RNA-seq expression paired case-control profile data. The following |
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example in Table 1 shows the right structure for RNA-seq expression data input. |
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|
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@@ -103,7 +103,7 @@ data <- c( 1879, 2734, 2369, 2636, 2188, 9743, 9932, 10099, |
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data <- matrix(data, nrow=6, ncol=8, byrow=TRUE) |
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rownames(data) <- c(paste0('Gene ', 1:3), '...', 'Gene N-1', 'Gene N') |
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-colnames(data) <- paste0('Sample ', 1:8) |
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+colnames(data) <- c(paste0('Case ', 1:4), paste0('Control ', 1:4)) |
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kable( data, |
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caption = 'Example of user input format' ) |