1. DEXSeq
  2. Graph
Graph of DEXSeq
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  • 5398518 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:02 -0400;
  • 074c0bf (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:02 -0400;
  • 1e42f0c Merge pull request <a href="#8">#8</a> from klugem/html_table_coloring by Alejandro Reyes <areyesq89@users.noreply.github.com> 2023-02-24 11:45:24 +0100;
  • 1898ed7 Merge pull request <a href="#9">#9</a> from klugem/html_overview_exon_changes by Alejandro Reyes <areyesq89@users.noreply.github.com> 2023-02-24 11:44:38 +0100;
  • 1957658 Fixed documentation error by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-22 14:15:42 +0100;
  • 21a5417 Bumped version number by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-22 13:58:55 +0100;
  • 08a1c4e Added requirement for DESeq2 version by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-22 13:54:35 +0100;
  • 21630ab Enabled running glmGamPoi GLMs by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-22 13:53:30 +0100;
  • a4258cc Namespace now created by roxygen by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-21 12:59:26 +0100;
  • f9de798 Specified counting reads in summarizedOverlaps as default in the vignette. by Reyes Quiroz, Alejandro <alejandro.reyes_quiroz@novartis.com> 2023-02-20 19:07:41 +0100;
  • e996738 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:59 -0400;
  • 9660d73 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:59 -0400;
  • 372a76b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:07 +0000;
  • d91de62 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:07 +0000;
  • 07c0807 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:26 +0000;
  • 7d2d639 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:26 +0000;
  • 9f844bd bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:48:55 +0000;
  • 62dc651 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:48:55 +0000;
  • aa9d08b row 'exon_changes' had wrong exon count caused by rounding by Michael Kluge <michael.kluge@bio.ifi.lmu.de> 2020-11-11 15:14:38 +0100;
  • 4f16eff renamed column to fix coloring in HTML results table by Michael Kluge <michael.kluge@bio.ifi.lmu.de> 2020-11-11 14:37:14 +0100;
  • eb706b6 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:49 -0400;
  • f0a361a (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:41:49 -0400;
  • d8c5c74 (origin/RELEASE_3_11, RELEASE_3_11) update RELEASE version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-06-24 20:42:17 +0200;
  • 8c7508b Fixed bug from DEXSeqHTL by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-06-24 20:42:17 +0200;
  • d8a8b37 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:54 +0000;
  • cc8427b bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:25:54 +0000;
  • ddfc944 Added testthat to DESCRIPTION and bumped version by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 16:26:27 -0500;
  • d69d0fa Fixed error in testthat.R file by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 16:25:54 -0500;
  • b1d03ad Added first unit tests by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 15:54:12 -0500;
  • 9b7d99c Rewrote part of function to check inputs by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 15:53:58 -0500;
  • 135b119 Added ignore file by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 15:52:47 -0500;
  • d4684ee Added .Rproj to .gitignore list by areyesq89 <alejandro.reyes.ds@gmail.com> 2020-02-27 14:45:31 -0500;
  • bcda790 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:36 -0400;
  • ecc9bca (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:21 -0400;
  • e40db3f Fully import S4Vectors by Hervé Pagès <hpages@fredhutch.org> 2019-08-16 20:46:41 -0700;
  • d3047e2 DEXSeqResults now contains DFrame instead of DataFrame by Hervé Pagès <hpages@fredhutch.org> 2019-08-16 13:52:05 -0700;
  • e7ebf19 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:03 -0400;
  • f25cec3 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:26 -0400;
  • 4f592da (origin/RELEASE_3_8, RELEASE_3_8) Merged with devel version (remove check on HTSeq version) by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-11 10:35:39 -0400;
  • cd1a4ca Removed check on HTSeq version by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-11 10:35:39 -0400;
  • 85e30cd Fixed broken links from man pages by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-05 11:57:43 -0500;
  • c0887a8 Update DESCRIPTION by Alejandro Reyes <areyesq89@users.noreply.github.com> 2019-03-05 11:46:19 -0500;
  • 38fb4fc Fix version by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-05 11:35:46 -0500;
  • adffc3d Bumped version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-05 11:30:26 -0500;
  • bef021c Fixed broken links to code in the documentation by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-05 11:12:47 -0500;
  • 14bde13 Change in BiocParallel caused DEXSeq to break, updated it accordingly. by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-01 14:22:04 -0500;
  • 45acd82 Fix bug on DEXSeqDataSetFromSE by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-01 09:52:06 -0500;
  • ec9b153 Fixed more brokenrefences and typos by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-03-01 09:23:54 -0500;
  • 77ff6e1 Fix more typos by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-28 22:56:43 -0500;
  • a9a0d08 Fix typos by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-28 22:54:12 -0500;
  • 277d8b2 Fixed broken references by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-28 22:44:00 -0500;
  • 488964f Changed vignette to Rmd by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-28 21:36:10 -0500;
  • b805720 Fixed bug causing devel to break. When paralellizing, specify a minimum of 1 worker. by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-26 17:31:16 -0500;
  • 88f41de bumped version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-24 22:29:41 -0500;
  • 6d255c7 Replaced disjointExons by exonicParts by areyesq89 <alejandro.reyes.ds@gmail.com> 2019-02-24 22:28:00 -0500;
  • 8c6b911 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:29:30 -0500;
  • 1ad54e8 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:29:27 -0500;
  • 518770d Bumped version number for rebuild. by areyesq89 <alejandro.reyes.ds@gmail.com> 2018-12-03 14:34:22 -0500;
  • 1de6a6a Merge pull request <a href="#1">#1</a> from lparsons/python3 by Alejandro Reyes <areyesq89@users.noreply.github.com> 2018-12-03 14:31:40 -0500;
  • e6967da Make python scripts run under python2 and python3 by Lance Parsons <lparsons@princeton.edu> 2018-11-29 16:09:00 -0500;
  • 98eadce bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:29 -0400;
  • 1b938fc bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:47 -0400;
  • c496f38 Modified mention of biocLite() to BiocManager::install() by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2018-09-06 15:29:05 -0400;
  • 461b5ab bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 1b16e47 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:19 -0400;
  • 59bc2b3 (origin/RELEASE_3_6, RELEASE_3_6) update RELEASE version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2018-03-28 16:56:28 -0400;
  • 4a8af48 Fixed bug pointed out by Mariana by areyesq89 <alejandro.reyes.ds@gmail.com> 2018-03-28 16:56:28 -0400;
  • 26ad64a update RELEASE version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2018-02-20 17:08:42 -0500;
  • 460662d Updated e-mail address. by areyesq89 <alejandro.reyes.ds@gmail.com> 2018-02-20 17:08:42 -0500;
  • 353df1e Replace start(unlist(x)) with unlist(start(x)). The latter is guaranteed to work when 'x' is a GRangeList or GRanges object. by Hervé Pagès <hpages@fredhutch.org> 2018-02-10 07:47:02 -0800;
  • 73c50fc use is(x, "GRangesList") instead of class(x) == "GRangesList" by Hervé Pagès <hpages@fredhutch.org> 2018-02-04 22:38:01 -0800;
  • f899aba update RELEASE version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-12-07 13:35:59 -0500;
  • dff5b97 bumped version by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-12-07 13:35:59 -0500;
  • 293381d documentation fix: added host to biomaRt call in examples by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-12-07 13:34:52 -0500;
  • e74d759 Fixed version conflicts by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-11-28 10:20:30 -0500;
  • 8d89b50 update release version by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-11-23 12:59:05 -0500;
  • b5bdb3a Bumbed version number by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-11-23 12:59:05 -0500;
  • 0ac7df2 bug fix: my bug fix by areyesq89 <alejandro.reyes.ds@gmail.com> 2017-11-23 12:58:12 -0500;
  • 107d1af bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:12 -0400;
  • 1e87795 bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:34 -0400;
  • 05c9b56 Adaptation to arg changes in IRanges by LiNk-NY <mramos09@gmail.com> 2017-09-15 16:09:12 -0400;
  • 7ea8d74 Use the updated function instead of its deprecated alias by aoles <andrzej.oles@gmail.com> 2017-08-22 15:11:18 +0200;
  • 90c843e Bump version of packages that define RangedSummarizedExperiment derivatives (direct or indirect). Will help get rid of those class definitions that are cached on the user machines and became stale after GenomicRangesORGRangesList was renamed GenomicRanges_OR_GRangesList (on June 18, commit 130486). by Herve Pages <hpages@fhcrc.org> 2017-06-27 17:05:27 +0000;
  • c711590 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 5a8fffd (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 6f90415 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 4cf2acc (origin/RELEASE_3_4, RELEASE_3_4) merged bug fix from devel branch by Alejandro Reyes <alejandro.reyes@embl.de> 2017-03-13 14:43:21 +0000;
  • 23665e7 fixed bug in estimateExonFoldChanges function by Alejandro Reyes <alejandro.reyes@embl.de> 2017-03-13 13:13:49 +0000;
  • 67ad5af merged from devel branch: typos brought to my attention by Renan and Simon Melov by Alejandro Reyes <alejandro.reyes@embl.de> 2016-11-29 14:07:01 +0000;
  • ec9b246 Fixed two typos brought to my attention by Renan Antonio Chong and Simon Melov by Alejandro Reyes <alejandro.reyes@embl.de> 2016-11-29 14:04:25 +0000;
  • d101fe1 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • d2f9558 Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 50e7f56 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 350ed29 added BiocViews suggested by Mike by Alejandro Reyes <alejandro.reyes@embl.de> 2016-08-01 09:48:57 +0000;
  • f1d715a added to the vignette mentioning to Vivek's contributions on preprocessing using featureCounts by Alejandro Reyes <alejandro.reyes@embl.de> 2016-07-13 07:37:37 +0000;
  • bb1c01d Included BiocStyle2 by Alejandro Reyes <alejandro.reyes@embl.de> 2016-07-06 16:30:21 +0000;
  • af7dad2 merged devel and release branch by Alejandro Reyes <alejandro.reyes@embl.de> 2016-05-18 14:21:20 +0000;
  • c95a1c8 (origin/RELEASE_3_3, RELEASE_3_3) fixed bug with transcript visualization by Alejandro Reyes <alejandro.reyes@embl.de> 2016-05-18 14:20:52 +0000;
  • 87d3709 merged from devel branch by Alejandro Reyes <alejandro.reyes@embl.de> 2016-05-18 13:18:31 +0000;
  • 01f3b48 added visualization option of transcripts for dxd objects and fixed documentation warning by Alejandro Reyes <alejandro.reyes@embl.de> 2016-05-18 13:18:08 +0000;