1. DEGraph
  2. NAMESPACE
Browse code

Added NCIgraph to Imports.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@59584 bc3139a8-67e5-0310-9ffc-ced21a209358

Pierre Neuvial authored on 23/10/2011 21:49:37
Showing 1 changed files
NAMESPACE
History View file @ c7dd842
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@@ -18,7 +18,7 @@ import(graph)
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 import(KEGGgraph)
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 ## importFrom(graph,subGraph, numEdges, validGraph, isDirected, removeEdge)
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 ## importFrom(KEGGGraph, parseKGML, getPathwayInfo, KEGGpathway2Graph, getTitle, getSubtype)
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-
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+importFrom(NCIgraph, is.NCIgraph)
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 ##importFrom(KEGGGraph, getKEGGedgeData)
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 ##importFrom(graph, edgeData)
Browse code

Adds AGDEX to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@59257 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 15/10/2011 00:24:45
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NAMESPACE
History View file @ 1101557
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@@ -19,6 +19,10 @@ import(KEGGgraph)
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 ## importFrom(graph,subGraph, numEdges, validGraph, isDirected, removeEdge)
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 ## importFrom(KEGGGraph, parseKGML, getPathwayInfo, KEGGpathway2Graph, getTitle, getSubtype)
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+##importFrom(KEGGGraph, getKEGGedgeData)
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+
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+##importFrom(graph, edgeData)
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+
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 importFrom(R.methodsS3, throw)
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 importFrom(Rgraphviz, layoutGraph, renderGraph)
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 importFrom(rrcov, T2.test)
Browse code

LJ: Bug fix, removed NCIgraph dependency.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@54155 bc3139a8-67e5-0310-9ffc-ced21a209358

Laurent Jacob authored on 29/03/2011 23:02:01
Showing 1 changed files
NAMESPACE
History View file @ 919f993
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@@ -25,4 +25,4 @@ importFrom(rrcov, T2.test)
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 importFrom(mvtnorm, rmvnorm)
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 importFrom(RBGL,connectedComp)
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 importFrom(lattice, level.colors)
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-importFrom(NCIgraph, is.NCIgraph)
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+## importFrom(NCIgraph, is.NCIgraph)
Browse code

LJ: Updated version for bioC 2.8 release. Changes include:

o Added support of NCI networks through the NCIgraph package.
o Updated the man page of the Loi2008 data.



git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@53977 bc3139a8-67e5-0310-9ffc-ced21a209358

Laurent Jacob authored on 23/03/2011 22:42:35
Showing 1 changed files
NAMESPACE
History View file @ 0280b3e
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@@ -25,4 +25,4 @@ importFrom(rrcov, T2.test)
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 importFrom(mvtnorm, rmvnorm)
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 importFrom(RBGL,connectedComp)
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 importFrom(lattice, level.colors)
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-
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+importFrom(NCIgraph, is.NCIgraph)
Browse code

Added package DEGraph to svn .

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@50237 bc3139a8-67e5-0310-9ffc-ced21a209358

Nishant Gopalakrishnan authored on 15/10/2010 18:54:36
Showing 1 changed files
NAMESPACE
History View file @ 6fa7f7a
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new file mode 100644
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@@ -0,0 +1,28 @@
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+export("AN.test",
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+       "BS.test",
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+       "getConnectedComponentList",
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+       "getKEGGPathways",
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+       "getSignedGraph",
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+       "graph.T2.test",
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+       "hyper.test",
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+       "laplacianFromA",
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+       "plotValuedGraph",
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+       "randomWAMGraph",
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+       "testOneConnectedComponent",
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+       "testOneGraph",
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+       "twoSampleFromGraph",
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+       "writeAdjacencyMatrix2KGML")
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+
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+## import(R.utils)
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+import(graph)
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+import(KEGGgraph)
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+## importFrom(graph,subGraph, numEdges, validGraph, isDirected, removeEdge)
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+## importFrom(KEGGGraph, parseKGML, getPathwayInfo, KEGGpathway2Graph, getTitle, getSubtype)
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+
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+importFrom(R.methodsS3, throw)
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+importFrom(Rgraphviz, layoutGraph, renderGraph)
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+importFrom(rrcov, T2.test)
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+importFrom(mvtnorm, rmvnorm)
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+importFrom(RBGL,connectedComp)
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+importFrom(lattice, level.colors)
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+