1. DEGraph
  2. Commit c7dd84280305dd9e60bdee3f7ae963c54f90637e
Browse code

Added NCIgraph to Imports.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@59584 bc3139a8-67e5-0310-9ffc-ced21a209358

Pierre Neuvial authored on 23/10/2011 21:49:37
Showing 10 changed files
DESCRIPTION
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 Package: DEGraph
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 Title: Two-sample tests on a graph
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-Version: 1.5.2
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-Date: 2011-10-18
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+Version: 1.5.3
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+Date: 2011-10-23
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 Author: Laurent Jacob, Pierre Neuvial and Sandrine Dudoit
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 Maintainer: Laurent Jacob <laurent.jacob@gmail.com>
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 Description: DEGraph implements recent hypothesis testing methods
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   and tools to visualize the results.
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 License: GPL-3
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 LazyLoad: yes
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-Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, Rgraphviz, rrcov
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+Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, Rgraphviz, rrcov, NCIgraph
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 Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz, NCIgraph
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 Depends: R (>= 2.10.0), R.utils
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 biocViews: Microarray, Bioinformatics, DifferentialExpression, GraphsAndNetworks
NAMESPACE
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 import(KEGGgraph)
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 ## importFrom(graph,subGraph, numEdges, validGraph, isDirected, removeEdge)
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 ## importFrom(KEGGGraph, parseKGML, getPathwayInfo, KEGGpathway2Graph, getTitle, getSubtype)
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-
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+importFrom(NCIgraph, is.NCIgraph)
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 ##importFrom(KEGGGraph, getKEGGedgeData)
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 ##importFrom(graph, edgeData)
incl/testOneGraph.Rex
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 library("Rgraphviz")
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 data("Loi2008_DEGraphVignette")
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 exprData <- exprLoi2008
incl/tests.Rex
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 library("rrcov")
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 data("Loi2008_DEGraphVignette")
inst/doc/DEGraph.Rnw
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@@ -116,7 +116,6 @@ library("R.utils")
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 ##library(rrcov) ## for 'T2.test'
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 library(corpcor)
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 library(KEGGgraph)
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-library(NCIgraph)
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 library(Rgraphviz)
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 ##library(RBGL)
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 library(fields) # For image.plot called in plotValuedGraph
man/AN.test.Rd
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 \examples{
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 library("rrcov")
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 data("Loi2008_DEGraphVignette")
man/BS.test.Rd
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 \examples{
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 library("rrcov")
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 data("Loi2008_DEGraphVignette")
man/hyper.test.Rd
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 \examples{
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 library("rrcov")
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 data("Loi2008_DEGraphVignette")
man/plotValuedGraph.Rd
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 \examples{
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 library("Rgraphviz")
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 data("Loi2008_DEGraphVignette")
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 exprData <- exprLoi2008
man/testOneGraph.Rd
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 \examples{
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 library("Rgraphviz")
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 library("KEGGgraph")
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-library("NCIgraph")
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+## library("NCIgraph")
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 data("Loi2008_DEGraphVignette")
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 exprData <- exprLoi2008