git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@59368 bc3139a8-67e5-0310-9ffc-ced21a209358
Pierre Neuvial authored on 17/10/2011 21:22:04
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Package: DEGraph |
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Title: Two-sample tests on a graph |
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-Version: 1.5.0 |
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-Date: 2011-03-23 |
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+Version: 1.5.1 |
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+Date: 2011-10-16 |
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Author: Laurent Jacob, Pierre Neuvial and Sandrine Dudoit |
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Maintainer: Laurent Jacob <laurent.jacob@gmail.com> |
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Description: DEGraph implements recent hypothesis testing methods |
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@@ -11,12 +11,12 @@ Description: DEGraph implements recent hypothesis testing methods |
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test individual genes, then test gene sets for enrichment in |
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differentially expressed genes. These recent methods take into |
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account the topology of the network to yield more powerful detection |
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- procedures. DEGraph provides methods to easily test all KEGG |
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+ procedures. DEGraph provides methods to easily test all KEGG |
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pathways for differential expression on any gene expression data set |
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and tools to visualize the results. |
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License: GPL-3 |
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LazyLoad: yes |
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Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, Rgraphviz, rrcov |
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-Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz |
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+Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz, NCIgraph |
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Depends: R (>= 2.10.0), R.utils |
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biocViews: Microarray, Bioinformatics, DifferentialExpression, GraphsAndNetworks |
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##library(rrcov) ## for 'T2.test' |
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library(corpcor) |
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library(KEGGgraph) |
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-##library(Rgraphviz) |
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+library(Rgraphviz) |
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##library(RBGL) |
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library(fields) # For image.plot called in plotValuedGraph |
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library(lattice) |
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## Bioconductor packages |
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source("http://bioconductor.org/biocLite.R")
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+biocLite("Rgraphviz")
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biocLite("KEGGgraph")
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biocLite("marray")
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@@ -12,6 +13,4 @@ install.packages("fields")
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## HB's packages |
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source("http://www.braju.com/R/hbLite.R")
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hbLite("R.utils")
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-## temporary: |
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-installPackages("http://www.braju.com/R/repos/R.oo_1.7.4.tar.gz")
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