git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEGraph@87035 bc3139a8-67e5-0310-9ffc-ced21a209358
Sonali Arora authored on 04/03/2014 22:12:21
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Package: DEGraph |
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Title: Two-sample tests on a graph |
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-Version: 1.15.1 |
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+Version: 1.15.2 |
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Date: 2012-04-27 |
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Author: Laurent Jacob, Pierre Neuvial and Sandrine Dudoit |
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Maintainer: Laurent Jacob <laurent.jacob@gmail.com> |
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-Description: DEGraph implements recent hypothesis testing methods |
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- which directly assess whether a particular gene network is |
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- differentially expressed between two conditions. This is to be |
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- contrasted with the more classical two-step approaches which first |
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- test individual genes, then test gene sets for enrichment in |
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- differentially expressed genes. These recent methods take into |
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- account the topology of the network to yield more powerful detection |
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- procedures. DEGraph provides methods to easily test all KEGG |
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- pathways for differential expression on any gene expression data set |
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- and tools to visualize the results. |
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+Description: DEGraph implements recent hypothesis testing methods which |
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+ directly assess whether a particular gene network is |
|
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+ differentially expressed between two conditions. This is to be |
|
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+ contrasted with the more classical two-step approaches which |
|
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+ first test individual genes, then test gene sets for enrichment |
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+ in differentially expressed genes. These recent methods take |
|
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+ into account the topology of the network to yield more powerful |
|
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+ detection procedures. DEGraph provides methods to easily test |
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+ all KEGG pathways for differential expression on any gene |
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+ expression data set and tools to visualize the results. |
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License: GPL-3 |
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LazyLoad: yes |
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-Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, Rgraphviz, rrcov, NCIgraph |
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-Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz, NCIgraph |
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+Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, |
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+ Rgraphviz, rrcov, NCIgraph |
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+Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, |
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+ rrcov, Rgraphviz, NCIgraph |
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Depends: R (>= 2.10.0), R.utils |
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-biocViews: Microarray, DifferentialExpression, GraphsAndNetworks, NetworkAnalysis, NetworkEnrichment |
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+biocViews: Microarray, DifferentialExpression, GraphAndNetwork, |
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+ Network, NetworkEnrichment |