data("Loi2008_DEGraphVignette") exprData <- exprLoi2008 rn <- rownames(exprData) ## Retrieve expression levels data for genes from one KEGG pathway graph <- grListKEGG[[1]] pname <- attr(graph, "label") cat(verbose, "Pathway name: ", pname) sgraph <- getSignedGraph(graph, verbose=TRUE) print(sgraph) graphList <- getConnectedComponentList(graph, verbose=TRUE) print(graphList)