1. DEFormats
  2. Graph
Graph of DEFormats
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  • 93e0798 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:48:54 -0400;
  • aeab5ae (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:48:54 -0400;
  • f6a62bc bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:45:38 -0400;
  • 208c3aa (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:45:38 -0400;
  • 3837f98 Update e-mail address by aoles <andrzej.oles@gmail.com> 2023-04-16 00:56:58 +0200;
  • 98591a2 Re-generate documentation with current roxygen2 version by aoles <andrzej.oles@gmail.com> 2023-04-16 00:49:03 +0200;
  • 2feebf6 Address R CMD CHECK error by aoles <andrzej.oles@gmail.com> 2023-04-16 00:14:45 +0200;
  • 86e18c2 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:13:20 -0400;
  • 4c9b97c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:13:20 -0400;
  • c6b0d89 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:30:51 +0000;
  • 8014385 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:30:51 +0000;
  • 166a3cf bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:26:36 +0000;
  • ff4d252 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:26:36 +0000;
  • 8c0fdbf bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:19:12 +0000;
  • ae1b30e (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:19:12 +0000;
  • 37adcc9 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:13:03 -0400;
  • 5297c56 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:13:03 -0400;
  • f0dc1ba bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:56:04 +0000;
  • 797baa1 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:56:04 +0000;
  • 14ece35 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:40:44 -0400;
  • 55e6cf6 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:36 -0400;
  • 4934fb8 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:21 -0400;
  • 02c6ec6 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:01 -0400;
  • 9cf213e (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:28:29 -0500;
  • 59edbd1 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:28:27 -0500;
  • 6833333 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:35 -0400;
  • 9aa8b05 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:00 -0400;
  • 8f2e09a replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:47:33 -0400;
  • 84d74b8 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:41 -0400;
  • 8f2bac6 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:41 -0400;
  • ae8172e Update NEWS by aoles <andrzej.oles@gmail.com> 2018-04-26 00:45:22 +0200;
  • 9a4297a (origin/RELEASE_3_6, RELEASE_3_6) Adapt to recent changes in edgeR by aoles <andrzej.oles@gmail.com> 2018-02-07 17:07:30 +0100;
  • 6925539 Adapt to recent changes in edgeR by aoles <andrzej.oles@gmail.com> 2018-02-07 16:40:04 +0100;
  • acb7b46 Retain rownames in gene annotation when converting between `DGEList` and `DESeqDataSet` by aoles <andrzej.oles@gmail.com> 2017-10-31 16:01:01 +0100;
  • 57ccd5e bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:19 -0400;
  • 77c214a bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:14 -0400;
  • 88a01e1 Fix imports and add coercion of row metadata from `GRangesList` to `data.frame` by aoles <andrzej.oles@gmail.com> 2017-10-30 16:20:15 +0100;
  • a6239f5 Convert data frames containing feature fragments annotation to `GRangesList` objects (see https://github.com/aoles/DEFormats/issues/5) by aoles <andrzej.oles@gmail.com> 2017-10-29 01:34:16 +0200;
  • da48b7b bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 4eef9c0 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • d97bb74 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 64e2799 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 954c15e (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • b3ae189 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 6bea9bd (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 916636b Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • e0a013e Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 6a69f60 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • ffb24c6 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • de4e4a1 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • f0fcd92 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 6bb764a Add to the vignette FAQ section on converting DGEList to RangedSummarizedExperiment; use italics for class names by Andrzej Oleś <andrzej.oles@gmail.com> 2016-03-29 15:01:24 +0000;
  • e3b039f Updated README.md, changed maintainer email address, and removed .Rbuildignore which was checked in by mistake by Andrzej Oleś <andrzej.oles@gmail.com> 2016-03-29 12:47:16 +0000;
  • 2e9bacb Fix to https://github.com/aoles/DEFormats/issues/2: Make sure that conversion from DGEList to RangedSummarizedExperiment and back to DGEList results in the same object by Andrzej Oleś <andrzej.oles@gmail.com> 2016-03-29 10:07:01 +0000;
  • dd6eb22 Adding SpidermiR, DRIMSeq, debrowser, GMRP, ISoLDE, CountClust, OncoScore, AneuFinder, recoup, genphen, DEFormats, sscu by Martin Morgan <mtmorgan@fhcrc.org> 2016-03-23 22:36:02 +0000;