Bioconductor Code: DECIPHER

Graph of DECIPHER

f6969e7 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:16 -0400;
e33ea83 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:16 -0400;
c024d39 Fixes for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2023-10-14 16:31:39 -0400;
4268019 Fixes for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2023-09-28 08:52:30 -0400;
a6665a1 Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2023-09-24 18:18:30 -0400;
8507a9d bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:15 -0400;
9be570c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:15 -0400;
9bfb696 Minor update to fix timeout. by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2023-04-23 15:14:48 -0400;
f8e1f81 Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2023-04-16 09:46:18 -0400;
ffdccd0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:21 -0400;
7de99ec (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:21 -0400;
82066eb Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2022-10-18 12:37:14 -0400;
583ef32 New Clusterize function by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2022-09-15 17:16:53 -0400;
8dca3d4 Minor improvements to AlignProfiles, FindSynteny, TreeLine, and vignettes. Major improvements to IdClusters. by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2022-08-04 20:46:21 -0400;
eca38ea Fixes for DetectRepeats and TreeLine functions and documentation. Improvements to IdClusters. by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2022-07-27 11:55:20 -0400;
7bf127b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:12 +0000;
437e600 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:12 +0000;
d01880f Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2022-04-25 10:45:06 -0400;
84592e4 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:41 +0000;
45da5ca (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:41 +0000;
7cad0ab bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:12 +0000;
bcd35a8 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:12 +0000;
9a07d7d Final updates for next release by Erik Wright <sixfoot10@eriks-mbp-5.myfiosgateway.com> 2021-05-18 07:43:52 -0400;
cc59d67 Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2021-05-07 14:35:09 -0400;
9ffd176 Adding NonCoding class and functions by Erik Wright <sixfoot10@Eriks-MBP-5.attlocal.net> 2021-02-13 10:58:26 -0500;
6a70842 (origin/RELEASE_3_12, RELEASE_3_12) Update RELEASE version 3.12 by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-10-28 14:49:22 -0400;
54960ff Fixing issue with Windows builds by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-10-28 14:49:22 -0400;
79b8804 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:11 -0400;
a1e0770 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:11 -0400;
a0b7bda Update for next release by Erik Wright <sixfoot10@Eriks-MBP-5.attlocal.net> 2020-10-26 17:58:10 -0400;
237cc7d (origin/RELEASE_3_11, RELEASE_3_11) Fixing DESCIPTION file in release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-05-11 09:00:15 -0400;
164a5f6 Update RELEASE version 3.11 by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-05-06 18:53:05 -0400;
b2ea653 Adding root argument to IdClusters. by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-05-06 18:53:05 -0400;
62489de bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:13 +0000;
95dbaea bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:13 +0000;
31ad215 Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-04-25 21:46:05 -0400;
fe125f3 Fixing bugs for R v4 by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2020-02-26 16:37:30 -0500;
a132f15 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:55 -0400;
45615ee (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:22 -0400;
74b314e Update for next release by Erik Wright <sixfoot10@Eriks-MacBook-Pro-5.local> 2019-10-15 20:24:19 -0400;
44b172b bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:07 -0400;
658ae23 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:31 -0400;
730ee7e Update for next release by Erik Wright <sixfoot10@fq-wifi-10-215-188-166.wireless.pitt.edu> 2019-04-25 18:02:53 -0400;
db7b017 (origin/RELEASE_3_8, RELEASE_3_8) Update RELEASE version 3.8 by Erik Wright <sixfoot10@eriks-mbp-5.lan> 2019-01-21 19:51:01 -0500;
112f9cf Bug fix for IdTaxa by Erik Wright <sixfoot10@eriks-mbp-5.lan> 2019-01-21 19:51:01 -0500;
3a5a019 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:09:25 -0500;
553804c Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:09:20 -0500;
ddd989b bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
04a8d1e bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
4c50982 Changes for next release. by Erik Wright <sixfoot10@fq-wifi-10-215-180-120.wireless.pitt.edu> 2018-10-29 19:12:29 -0400;
23d4dbe additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:51:02 +0000;
35aa66f (origin/RELEASE_3_7, RELEASE_3_7) Changes to be committed: modified: DESCRIPTION by Erik Wright <sixfoot10@fq-wifi-10-215-203-122.wireless.pitt.edu> 2018-05-09 15:44:22 -0400;
855db7e Bug fix for RSQLite v2.1.1 by Erik Wright <sixfoot10@fq-wifi-10-215-203-122.wireless.pitt.edu> 2018-05-09 12:30:45 -0400;
599c782 Bug fix for RSQLite v2.1.1 by Erik Wright <sixfoot10@fq-wifi-10-215-203-122.wireless.pitt.edu> 2018-05-09 12:30:45 -0400;
1cf3d17 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
b18f4ae bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
9be836e Major updates for new release. by Erik Wright <sixfoot10@eriks-mbp-4.lan> 2018-04-22 07:33:31 -0400;
0a83de6 Use get_List_elementType() instead of get_XStringSet_xsbaseclassname() by Hervé Pagès <hpages@fredhutch.org> 2018-03-15 18:40:27 -0700;
267ed7c use coercion to IRangesList rather than calling RangesList() by Hervé Pagès <hpages@fredhutch.org> 2018-01-22 00:54:44 -0800;
846d06e bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:12 -0400;
ed9acaa (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:36 -0400;
3f75a6d Minor changes for next release. by Erik Wright <sixfoot10@Eriks-MacBook-Pro.local> 2017-10-26 21:33:07 -0400;
64bb399 Major changes for next release. by Erik Wright <sixfoot10@Eriks-MacBook-Pro.local> 2017-10-24 07:07:56 -0400;
d0821cc bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
1a57b8e (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
8ad0cf0 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
44e659f Major update for next BioC release. by Erik Wright <DECIPHER@cae.wisc.edu> 2017-03-31 20:14:51 +0000;
b4e79ba bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
79f9ec4 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
222e77d bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
a0a4301 Minor fixes. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-10-04 11:37:19 +0000;
6ab2d81 Major update. Added PredictDBN. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-09-04 00:47:27 +0000;
085a6c4 Minor fixes. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-30 17:26:53 +0000;
df439b6 Minor fixes. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-30 13:54:59 +0000;
bbf57b7 Minor update. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-28 13:27:16 +0000;
af167aa Minor update. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-28 12:44:13 +0000;
6f39a69 Minor update. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-23 08:38:48 +0000;
c951957 Major update: TrimDNA function, efficient subsetting, qbit encoding, guideTree is now a dendrogram. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-07-20 13:07:03 +0000;
e232c4e Fixing minor issues. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-06-13 10:01:25 +0000;
8717094 Fixing minor issues. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-06-07 20:10:55 +0000;
87eba14 (origin/RELEASE_3_3, RELEASE_3_3) Minor fixes. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-06-07 16:36:29 +0000;
77c22ce Minor fixes. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-05-23 19:44:42 +0000;
c4f6a7f bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
4becbe1 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
a767464 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
30de40d Fixing minor issues for final release. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-04-30 06:30:33 +0000;
a02fdd9 Adding ReadDendrogram and WriteDendrogram functions. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-03-31 10:37:44 +0000;
9abc19a Renaming compress to nbit to fix error under gcc. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-01-26 12:56:09 +0000;
2464165 removing file. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-01-24 17:16:23 +0000;
5c3e087 Major update including new import and database features. Previous DECIPHER sequence databases are not compatible with this update. by Erik Wright <DECIPHER@cae.wisc.edu> 2016-01-24 17:12:59 +0000;
19b5217 (origin/RELEASE_3_2, RELEASE_3_2) Improvements to DesignSignatures. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-12-10 22:57:56 +0000;
71e8d72 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
641feae Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
dd2a0af Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
b06c875 Bug fix. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-10-11 17:32:17 +0000;
34f694b Minor documentation update for next BioC release. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-10-07 20:38:59 +0000;
7b642b2 Minor update for next BioC release. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-10-05 19:14:19 +0000;
ade3e1c Major update for next BioC release. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-09-23 18:06:49 +0000;
40816bd (origin/RELEASE_3_1, RELEASE_3_1) New vignette for DesignSignatures. by Erik Wright <DECIPHER@cae.wisc.edu> 2015-08-29 19:57:03 +0000;
30f3f41 only browseURL() if (interactive()) to work around issue described at https://stat.ethz.ch/pipermail/r-help/2015-August/431411.html by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-08-18 18:50:27 +0000;