Mike Jiang authored on 15/11/2020 04:22:11
• GitHub committed on 15/11/2020 04:22:11
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+# This workflow uses actions that are not certified by GitHub. |
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+# They are provided by a third-party and are governed by |
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+# separate terms of service, privacy policy, and support |
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+# documentation. |
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+# |
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+ |
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+name: build |
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+ |
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+on: |
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+ push: |
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+ branches: [ release, master ] |
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+ pull_request: |
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+ branches: [ release, master ] |
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+ |
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+jobs: |
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+ build: |
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+ runs-on: ${{ matrix.config.os }}
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+ name: ${{ matrix.config.os }} (${{ matrix.r }})
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+ strategy: |
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+ fail-fast: false |
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+ matrix: |
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+ r: ['release', 'devel'] |
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+ config: |
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+ - {os: windows-latest, suffix: 'zip'}
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+ - {os: macOS-latest, suffix: 'tgz'}
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+ - {os: ubuntu-16.04, suffix: 'tar.gz', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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+ isMaster: |
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+ - ${{ contains(github.ref, 'master') }}
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+ exclude: |
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+ - isMaster: false |
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+ r: devel |
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+ - isMaster: true |
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+ r: release |
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+ env: |
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+ R_REMOTES_NO_ERRORS_FROM_WARNINGS: true |
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+ RSPM: ${{ matrix.config.rspm }}
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+ |
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+ steps: |
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+ - uses: actions/checkout@v2 |
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+ - name: Set up R ${{ matrix.r }}
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+ uses: r-lib/actions/setup-r@master |
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+ with: |
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+ r-version: ${{ matrix.r }}
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+ http-user-agent: ${{ matrix.config.http-user-agent }}
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+ |
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+ - uses: r-lib/actions/setup-pandoc@v1 |
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+ |
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+ - name: set token for cytoinstaller(and remotes) to increase github API rate limit |
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+ env: |
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+ SUPER_SECRET: ${{ secrets.CYTOINSTALLER_TOKEN }}
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+ run: echo "GITHUB_TOKEN=$SUPER_SECRET" >> $GITHUB_ENV |
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+ |
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+ - name: Query dependencies |
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+ run: | |
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+ install.packages('remotes')
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+ saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) |
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+ writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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+ shell: Rscript {0}
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+ |
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+ - name: Get bioc ver |
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+ run: echo "bioc_ver=$(Rscript -e 'writeLines(as.character(remotes::bioc_version()))')" >> $GITHUB_ENV |
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+ shell: bash |
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+ |
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+ - name: Cache R packages |
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+ if: runner.os != 'Windows' |
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+ uses: actions/cache@v2 |
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+ with: |
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+ path: ${{ env.R_LIBS_USER }}
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+ key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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+ restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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+ |
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+ - name: check bioc ver |
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+ run: echo $bioc_ver |
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+ shell: bash |
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+ |
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+ - name: Install system dependencies |
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+ if: runner.os == 'Linux' |
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+ run: | |
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+ while read -r cmd |
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+ do |
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+ eval sudo $cmd |
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+ done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "16.04"))')
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+ sudo apt-get install -y libcurl4-openssl-dev |
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+ |
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+ - name: Install dependencies |
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+ run: | |
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+ remotes::install_cran(c("rcmdcheck", "devtools"))
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+ remotes::install_github("RGLab/cytoinstaller")
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+ cytoinstaller::cyto_install_deps(dependencies = TRUE) |
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+ shell: Rscript {0}
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+ |
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+ - name: check rate limit |
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+ run: | |
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+ gh::gh("GET /rate_limit")$resources$core$remaining
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+ shell: Rscript {0}
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+ |
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+ - name: Check |
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+ env: |
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+ _R_CHECK_CRAN_INCOMING_REMOTE_: false |
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+ run: rcmdcheck::rcmdcheck(args = c("--no-manual"), check_dir = "check")
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+ shell: Rscript {0}
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+ |
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+ - name: Upload check results |
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+ if: failure() |
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+ uses: actions/upload-artifact@main |
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+ with: |
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+ name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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+ path: check |
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+ |
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+ - name: build src pkg |
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+ if: runner.os == 'Linux' |
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+ run: devtools::build() |
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+ shell: Rscript {0}
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+ |
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+ - name: build bin pkg |
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+ if: runner.os != 'Linux' |
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+ run: devtools::build(binary = TRUE) |
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+ shell: Rscript {0}
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+ |
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+ - name: Upload Release Asset |
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+ uses: svenstaro/upload-release-action@v2 |
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+ with: |
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+ repo_token: ${{ secrets.GITHUB_TOKEN }}
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+ file: '../*.${{ matrix.config.suffix }}'
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+ file_glob: true |
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+ tag: bioc_${{ env.bioc_ver}}
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+ overwrite: true |
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+ body: "This is my release text" |