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@@ -33,14 +33,18 @@ ce
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**cytobank_experiment** is a wrapper around the `ACS` file, which can be inspected by various accessors.
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```{r}
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sampleNames(ce)
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-colnames(ce)
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-markernames(ce)
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+ce_get_panels(ce)
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+ce_get_compensations(ce)
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+ce_get_samples(ce)
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+ce_get_channels(ce)
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+ce_get_markers(ce)
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pData(ce)
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```
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Then import `cytobank_experiment` into **GatingSet**
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```{r}
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gs <- cytobank_to_gatingset(ce)
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```
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+By default, the first `panel` (i.e. `panel_id = 1`) will be imported. Change `panel_id` argument to select different panel (if there are more than one , which can be inspected by `ce_get_panels` )
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Alternatively, the import can be done by `gatingML` and `fcs` files that are downloaded separately form Cytobank without `ACS`.
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```{r, eval=FALSE}
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