Browse code

remove that reference to tailgate

mikejiang authored on 26/10/2022 03:23:29
Showing 3 changed files

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@@ -1,7 +1,7 @@
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 Package: CytoML
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 Type: Package
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 Title: A GatingML Interface for Cross Platform Cytometry Data Sharing
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-Version: 2.9.2
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+Version: 2.9.3
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 Date: 2016-04-15
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 Author: Mike Jiang, Jake Wagner
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 Maintainer: Mike Jiang <mike@ozette.com>
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@@ -3,6 +3,7 @@
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 #include "CytoML_types.h"
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 #include "cpp11/declarations.hpp"
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+#include <R_ext/Visibility.h>
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 // parseFlowJoWorkspace.cpp
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 void setLogLevel(int short loglevel);
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@@ -63,16 +64,6 @@ extern "C" SEXP _CytoML_get_xml_file_path(SEXP ws) {
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 }
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 extern "C" {
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-/* .Call calls */
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-extern SEXP _CytoML_get_keywords_by_id(SEXP, SEXP);
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-extern SEXP _CytoML_get_keywords_by_name(SEXP, SEXP);
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-extern SEXP _CytoML_get_sample_groups(SEXP);
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-extern SEXP _CytoML_get_samples(SEXP);
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-extern SEXP _CytoML_get_xml_file_path(SEXP);
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-extern SEXP _CytoML_open_workspace(SEXP, SEXP, SEXP);
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-extern SEXP _CytoML_parse_workspace(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
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-extern SEXP _CytoML_setLogLevel(SEXP);
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-
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 static const R_CallMethodDef CallEntries[] = {
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     {"_CytoML_get_keywords_by_id",   (DL_FUNC) &_CytoML_get_keywords_by_id,    2},
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     {"_CytoML_get_keywords_by_name", (DL_FUNC) &_CytoML_get_keywords_by_name,  2},
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@@ -86,7 +77,7 @@ static const R_CallMethodDef CallEntries[] = {
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 };
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 }
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-extern "C" void R_init_CytoML(DllInfo* dll){
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+extern "C" attribute_visible void R_init_CytoML(DllInfo* dll){
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   R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
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   R_useDynamicSymbols(dll, FALSE);
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   R_forceSymbols(dll, TRUE);
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@@ -162,7 +162,7 @@ test_that("gatingML-cytobank exporting: cytotrol tcell",{
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   close(con)
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 })
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-register_plugins(flowStats:::.tailgate, "tailgate")
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+
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 test_that("autogating to cytobank--tcell", {
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   set.seed(1)