Package: CytoML
Type: Package
Title: A GatingML Interface for Cross Platform Cytometry Data Sharing
Version: 2.7.2
Date: 2016-04-15
Author: Mike Jiang, Jake Wagner
Maintainer: Mike Jiang <mike@ozette.com>
Description: Uses platform-specific implemenations of the GatingML2.0 standard 
    to exchange gated cytometry data with other software platforms.
License: file LICENSE
License_restricts_use: yes
LazyData: TRUE
Imports:
    cytolib(>= 2.3.10),
    flowCore (>= 1.99.10),
    flowWorkspace (>= 4.1.8),
    openCyto (>= 1.99.2),
    XML,
    data.table,
    jsonlite,
    RBGL,
    Rgraphviz,
    Biobase,
    methods,
    graph,
    graphics,
    utils,
    base64enc,
    plyr,
    dplyr,
    grDevices,
    methods,
    ggcyto (>= 1.11.4),
    yaml,
    lattice,
    stats,
    corpcor,
    RUnit,
    tibble,
    RcppParallel,
    xml2
biocViews: ImmunoOncology, FlowCytometry, DataImport, DataRepresentation
LinkingTo: Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib, Rhdf5lib, RcppArmadillo, RcppParallel(>= 4.4.2-1), flowWorkspace
Suggests:
    testthat,
    flowWorkspaceData ,
    knitr,
    rmarkdown,
    parallel
VignetteBuilder: knitr
RoxygenNote: 7.1.1
BugReports: https://github.com/RGLab/CytoML/issues
URL: https://github.com/RGLab/CytoML
Collate: 
    'AllClasses.R'
    'GatingSet2cytobank.R'
    'GatingSet2flowJo.R'
    'RcppExports.R'
    'gate-methods.R'
    'compensation.R'
    'cytobank2GatingSet.R'
    'cytobankExperiment.R'
    'cytolibml_bin_path.R'
    'flowJoWorkspace_Methods.R'
    'diva2GatingSet.R'
    'flowUtils_functions.R'
    'gatingML.R'
    'read.gatingML.cytobank.R'
    'graphGML_methods.R'
    'helperFunctions.R'
    'parameter-methods.R'
    'transforms.R'
    'utils.R'
    'writeGatingML.R'
    'zzz.R'
SystemRequirements: xml2, GNU make, C++11    
Encoding: UTF-8