| 553044c1 |
# Generated by roxygen2: do not edit by hand
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| 05f1c73c |
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| ed32c452 |
S3method(cytobank2GatingSet,cytobankExperiment)
S3method(cytobank2GatingSet,default)
S3method(extend,ellipsoidGate)
S3method(extend,polygonGate)
S3method(extend,rectangleGate)
S3method(getCompensationMatrices,cytobankExperiment)
S3method(getCompensationMatrices,graphGML)
S3method(getTransformations,cytobankExperiment)
S3method(getTransformations,graphGML)
S3method(openWorkspace,character)
S3method(print,cytobankExperiment)
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| 3b89521b |
export(CytoML.par.get)
export(CytoML.par.set)
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| ed32c452 |
export(GatingSet2cytobank)
export(GatingSet2flowJo)
export(closeWorkspace)
export(compare.counts)
export(cytobank2GatingSet)
export(cytobankExperiment)
export(extend)
export(getCompensationMatrices)
export(getFJWSubsetIndices)
export(getKeywords)
export(getSampleGroups)
export(getSamples)
export(getTransformations)
export(openDiva)
export(openWorkspace)
export(parseWorkspace)
export(read.gatingML.cytobank)
exportClasses(divaWorkspace)
exportClasses(flowJoWorkspace)
exportClasses(graphGML)
exportMethods(GatingSet)
exportMethods(closeWorkspace)
exportMethods(colnames)
exportMethods(compensate)
exportMethods(gating)
exportMethods(getChildren)
exportMethods(getGate)
exportMethods(getKeywords)
exportMethods(getNodes)
exportMethods(getParent)
exportMethods(getSampleGroups)
exportMethods(getSamples)
exportMethods(markernames)
exportMethods(pData)
exportMethods(parseWorkspace)
exportMethods(plot)
exportMethods(sampleNames)
exportMethods(show)
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import(data.table)
importClassesFrom(Biobase,AssayData)
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| ba5b4644 |
importClassesFrom(XML,XMLInternalDocument)
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importClassesFrom(graph,graph)
importClassesFrom(graph,graphBase)
importClassesFrom(graph,graphNEL)
importClassesFrom(methods,ANY)
importClassesFrom(methods,character)
importClassesFrom(methods,data.frame)
importClassesFrom(methods,environment)
importClassesFrom(methods,list)
importClassesFrom(methods,logical)
importClassesFrom(methods,matrix)
importClassesFrom(methods,missing)
importClassesFrom(methods,numeric)
importClassesFrom(methods,oldClass)
importFrom(RBGL,tsort)
importFrom(Rgraphviz,layoutGraph)
importFrom(Rgraphviz,renderGraph)
importFrom(XML,"xmlAttrs<-")
importFrom(XML,addChildren)
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importFrom(XML,free)
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importFrom(XML,getNodeSet)
importFrom(XML,newXMLNode)
importFrom(XML,saveXML)
importFrom(XML,xmlAttrs)
importFrom(XML,xmlChildren)
importFrom(XML,xmlElementsByTagName)
importFrom(XML,xmlGetAttr)
importFrom(XML,xmlName)
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importFrom(XML,xmlNamespace)
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importFrom(XML,xmlNode)
importFrom(XML,xmlRoot)
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importFrom(XML,xmlSApply)
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importFrom(XML,xmlTree)
importFrom(XML,xmlTreeParse)
importFrom(XML,xmlValue)
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importFrom(XML,xpathApply)
importFrom(XML,xpathSApply)
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| 05f1c73c |
importFrom(base64enc,base64decode)
importFrom(base64enc,base64encode)
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| ba5b4644 |
importFrom(dplyr,"%>%")
importFrom(dplyr,do)
importFrom(dplyr,group_by)
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| bf6b2609 |
importFrom(flowCore,"colnames<-")
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importFrom(flowCore,"identifier<-")
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importFrom(flowCore,"parameters<-")
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importFrom(flowCore,asinhtGml2)
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importFrom(flowCore,colnames)
importFrom(flowCore,compensate)
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importFrom(flowCore,compensatedParameter)
importFrom(flowCore,compensation)
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importFrom(flowCore,ellipsoidGate)
importFrom(flowCore,eval)
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importFrom(flowCore,exprs)
importFrom(flowCore,identifier)
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| 6d9ef2a5 |
importFrom(flowCore,logicleTransform)
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importFrom(flowCore,logicletGml2)
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importFrom(flowCore,logtGml2)
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importFrom(flowCore,parameters)
importFrom(flowCore,polygonGate)
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importFrom(flowCore,read.FCS)
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importFrom(flowCore,read.FCSheader)
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importFrom(flowCore,rectangleGate)
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importFrom(flowCore,spillover)
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importFrom(flowCore,transformList)
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| 05f1c73c |
importFrom(flowUtils,read.gatingML)
importFrom(flowUtils,write.gatingML)
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importFrom(flowWorkspace,"markernames<-")
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importFrom(flowWorkspace,"pData<-")
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importFrom(flowWorkspace,GatingSet)
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importFrom(flowWorkspace,GatingSetList)
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importFrom(flowWorkspace,add)
importFrom(flowWorkspace,asinh_Gml2)
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importFrom(flowWorkspace,asinhtGml2_trans)
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importFrom(flowWorkspace,clone)
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importFrom(flowWorkspace,compute_timestep)
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importFrom(flowWorkspace,extract_cluster_pop_name_from_node)
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importFrom(flowWorkspace,filterObject)
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importFrom(flowWorkspace,fix_channel_slash)
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importFrom(flowWorkspace,flow_trans)
importFrom(flowWorkspace,getChildren)
importFrom(flowWorkspace,getCompensationMatrices)
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importFrom(flowWorkspace,getCompensationObj)
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importFrom(flowWorkspace,getData)
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importFrom(flowWorkspace,getGate)
importFrom(flowWorkspace,getNodes)
importFrom(flowWorkspace,getParent)
importFrom(flowWorkspace,getPopStats)
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importFrom(flowWorkspace,getTotal)
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importFrom(flowWorkspace,getTransformations)
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importFrom(flowWorkspace,gh_check_cluster_node)
importFrom(flowWorkspace,gh_get_cluster_labels)
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importFrom(flowWorkspace,groupByTree)
importFrom(flowWorkspace,isHidden)
importFrom(flowWorkspace,isNegated)
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importFrom(flowWorkspace,keyword)
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importFrom(flowWorkspace,load_gs)
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importFrom(flowWorkspace,logicleGml2_trans)
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importFrom(flowWorkspace,logicle_trans)
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importFrom(flowWorkspace,logtGml2_trans)
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importFrom(flowWorkspace,markernames)
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importFrom(flowWorkspace,openWorkspace)
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importFrom(flowWorkspace,pData)
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importFrom(flowWorkspace,recompute)
importFrom(flowWorkspace,sampleNames)
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importFrom(flowWorkspace,save_gs)
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importFrom(flowWorkspace,set.count.xml)
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importFrom(flowWorkspace,show)
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importFrom(flowWorkspace,swap_data_cols)
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importFrom(flowWorkspace,transform)
importFrom(flowWorkspace,transformerList)
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importFrom(flowWorkspace,updateChannels)
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importFrom(ggcyto,rescale_gate)
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importFrom(grDevices,rgb)
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importFrom(graph,"nodeData<-")
importFrom(graph,"nodeDataDefaults<-")
importFrom(graph,"nodeRenderInfo<-")
importFrom(graph,"nodes<-")
importFrom(graph,addEdge)
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importFrom(graph,addNode)
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importFrom(graph,edges)
importFrom(graph,graphNEL)
importFrom(graph,inEdges)
importFrom(graph,nodeData)
importFrom(graph,removeNode)
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importFrom(graphics,abline)
importFrom(graphics,polygon)
importFrom(graphics,text)
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importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
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| c595a406 |
importFrom(methods,as)
importFrom(methods,extends)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,selectMethod)
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importFrom(methods,show)
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| c595a406 |
importFrom(methods,slot)
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importFrom(ncdfFlow,read.ncdfFlowSet)
importFrom(openCyto,gating)
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importFrom(plyr,ldply)
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| a306643b |
importFrom(plyr,name_rows)
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importFrom(stats,na.omit)
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importFrom(utils,localeToCharset)
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importFrom(utils,menu)
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importFrom(utils,packageVersion)
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| a306643b |
importFrom(yaml,read_yaml)
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useDynLib(CytoML,.registration = TRUE)
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