Name Mode Size
..
CoreGx-deprecated.Rd 100644 1 kb
CoreSet-accessors.Rd 100644 23 kb
CoreSet-class.Rd 100644 3 kb
CoreSet-utils.Rd 100644 3 kb
CoreSet.Rd 100644 3 kb
CoreSet2.Rd 100644 2 kb
DataMapper-accessors.Rd 100644 1 kb
DataMapper-class.Rd 100644 1 kb
LongTable-accessors.Rd 100644 0 kb
LongTable-class.Rd 100644 12 kb
LongTable.Rd 100644 2 kb
LongTableDataMapper-accessors.Rd 100644 6 kb
LongTableDataMapper-class.Rd 100644 3 kb
LongTableDataMapper.Rd 100644 3 kb
TREDataMapper-accessors.Rd 100644 6 kb
TREDataMapper-class.Rd 100644 2 kb
TREDataMapper.Rd 100644 3 kb
TreatmentResponseExperiment-class.Rd 100644 2 kb
TreatmentResponseExperiment.Rd 100644 4 kb
aggregate-LongTable-method.Rd 100644 4 kb
aggregate-data.table-method.Rd 100644 4 kb
aggregate2.Rd 100644 4 kb
amcc.Rd 100644 2 kb
as.Rd 100644 2 kb
as.long.table.Rd 100644 1 kb
assay-LongTableDataMapper-ANY-method.Rd 100644 1 kb
assay-TREDataMapper-ANY-method.Rd 100644 1 kb
assayCols.Rd 100644 1 kb
assayIndex.Rd 100644 0 kb
assayKeys.Rd 100644 0 kb
assays-LongTableDataMapper-method.Rd 100644 1 kb
assays-TREDataMapper-method.Rd 100644 1 kb
assignment-immutable.Rd 100644 2 kb
buildComboProfiles-LongTable-method.Rd 100644 1 kb
buildComboProfiles.Rd 100644 1 kb
buildLongTable-character-method.Rd 100644 1 kb
buildLongTable-data.frame-method.Rd 100644 2 kb
buildLongTable-list-method.Rd 100644 2 kb
buildLongTable.Rd 100644 0 kb
c.immutable.Rd 100644 1 kb
callingWaterfall.Rd 100644 2 kb
cash-LongTable-method.Rd 100644 1 kb
cash-set-LongTable-method.Rd 100644 1 kb
checkColumnCardinality.Rd 100644 1 kb
checkCsetStructure.Rd 100644 1 kb
clevelandSmall_cSet.Rd 100644 1 kb
colData-LongTableDataMapper-method.Rd 100644 1 kb
colData-TREDataMapper-method.Rd 100644 1 kb
colIDs.Rd 100644 1 kb
colMeta.Rd 100644 1 kb
collect_fn_params.Rd 100644 1 kb
connectivityScore.Rd 100644 3 kb
cosinePerm.Rd 100644 2 kb
dot-.Rd 100644 1 kb
dot-assayToBumpyMatrix.Rd 100644 1 kb
dot-convertCSetMolecularProfilesToSE.Rd 100644 1 kb
dot-distancePointLine.Rd 100644 1 kb
dot-distancePointSegment.Rd 100644 1 kb
dot-fitCurve2.Rd 100644 4 kb
dot-intersectList.Rd 100644 1 kb
dot-longTableToSummarizedExperiment.Rd 100644 1 kb
dot-symSetDiffList.Rd 100644 1 kb
dot-unionList.Rd 100644 1 kb
drop_fn_params.Rd 100644 1 kb
drugSensitivitySig.Rd 100644 1 kb
endoaggregate-LongTable-method.Rd 100644 5 kb
endoaggregate.Rd 100644 1 kb
exampleDataMapper.Rd 100644 0 kb
getIntern-set-LongTable-immutable_list-method.Rd 100644 1 kb
getIntern-set.Rd 100644 1 kb
getIntern.Rd 100644 1 kb
guessMapping-LongTableDataMapper-method.Rd 100644 2 kb
guessMapping.Rd 100644 1 kb
gwc.Rd 100644 1 kb
idCols.Rd 100644 1 kb
immutable.Rd 100644 2 kb
is.items.Rd 100644 1 kb
is_optim_compatible.Rd 100644 1 kb
lapply-MultiAssayExperiment-method.Rd 100644 1 kb
list_OR_LongTable-class.Rd 100644 0 kb
make_optim_function.Rd 100644 1 kb
mcc.Rd 100644 1 kb
merckLongTable.Rd 100644 0 kb
mergeAssays-LongTable-method.Rd 100644 1 kb
mergeAssays.Rd 100644 1 kb
metaConstruct.Rd 100644 2 kb
metadata-LongTable-method.Rd 100644 1 kb
metadata-set-LongTable-method.Rd 100644 1 kb
mutable.Rd 100644 1 kb
nci_TRE_small.Rd 100644 1 kb
optimizeCoreGx.Rd 100644 1 kb
reindex-LongTable-method.Rd 100644 1 kb
reindex.Rd 100644 1 kb
rowData-LongTableDataMapper-method.Rd 100644 1 kb
rowData-TREDataMapper-method.Rd 100644 1 kb
rowIDs.Rd 100644 0 kb
rowMeta.Rd 100644 0 kb
sensitivityInfo-set.Rd 100644 1 kb
sensitivityInfo.Rd 100644 1 kb
sensitivityMeasures-set.Rd 100644 1 kb
sensitivityMeasures.Rd 100644 1 kb
sensitivityProfiles-set.Rd 100644 1 kb
sensitivityProfiles.Rd 100644 1 kb
sensitivityRaw-set.Rd 100644 1 kb
sensitivityRaw.Rd 100644 1 kb
sensitivitySlotToLongTable.Rd 100644 1 kb
setOps-immutable.Rd 100644 1 kb
show-CoreSet-method.Rd 100644 0 kb
show-LongTable-method.Rd 100644 0 kb
showSigAnnot.Rd 100644 1 kb
sub-LongTable-ANY-ANY-ANY-method.Rd 100644 3 kb
sub-subset-LongTable-ANY-ANY-method.Rd 100644 1 kb
subset-LongTable-method.Rd 100644 3 kb
subsetTo.Rd 100644 1 kb
summarizeMolecularProfiles.Rd 100644 1 kb
summarizeSensitivityProfiles.Rd 100644 1 kb
updateObject-CoreSet-method.Rd 100644 1 kb
updateObject-LongTable-method.Rd 100644 1 kb
updateSampleId.Rd 100644 1 kb
updateTreatmentId.Rd 100644 1 kb
README.md
[![R-CMD-check](https://github.com/bhklab/CoreGx/workflows/R-CMD-check-bioc-devel/badge.svg)](https://github.com/bhklab/CoreGx/actions) CoreGx ========== Abstracted classes and functions to be inherited and extended by the PharmacoGx, RadioGx and ToxicoGx R packages. Dependencies: All dependencies are available from CRAN or Bioconductor.