Bioconductor Code: CompoundDb

Name	Mode	Size
.github	040000
R	040000
inst	040000
man	040000
tests	040000
vignettes	040000
.Rbuildignore	100644	0 kb
.editorconfig	100644	0 kb
.gitignore	100644	0 kb
DESCRIPTION	100644	3 kb
NAMESPACE	100644	5 kb
NEWS.md	100644	8 kb
README.md	100644	2 kb
_pkgdown.yml	100644	0 kb
logo.png	100644	288 kb

README.md

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/CompoundDb/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/CompoundDb/actions?query=workflow%3AR-CMD-check-bioc) [![codecov](https://codecov.io/gh/rformassspectrometry/CompoundDb/branch/main/graph/badge.svg?token=7g2DAgHR71)](https://codecov.io/gh/rformassspectrometry/CompoundDb) [![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0) [![years in bioc](http://bioconductor.org/shields/years-in-bioc/CompoundDb.svg)](https://bioconductor.org/packages/release/bioc/html/CompoundDb.html) [![Ranking by downloads](http://bioconductor.org/shields/downloads/release/CompoundDb.svg)](https://bioconductor.org/packages/stats/bioc/CompoundDb/) [![build release](http://bioconductor.org/shields/build/release/bioc/CompoundDb.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/CompoundDb/) [![build devel](http://bioconductor.org/shields/build/devel/bioc/CompoundDb.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/CompoundDb/) `CompoundDb` ... preserve compound annotations. # Installation and requirements The package can be installed with ```r install.packages(c("BiocManager", "remotes")) BiocManager::install("CompoundDb") ``` # Creating and using (chemical) compound databases This package provides functionality to create and use compound databases generated from (mostly publicly) available resources such as [HMDB](http://www.hmdb.ca), [ChEBI](https://www.ebi.ac.uk/chebi/) and [PubChem](https://pubchem.ncbi.nlm.nih.gov). For more information see the package [homepage](https://rformassspectrometry.github.io/CompoundDb). # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).