1. ComplexHeatmap
  2. Graph
Graph ofComplexHeatmap
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  • 2c5fe70 (origin/RELEASE_3_15, RELEASE_3_15) update citation by Zuguang Gu <jokergoo@gmail.com> 2022-08-08 21:31:16 +0200;
  • f6edeaa (HEAD -> master, origin/master, origin/HEAD) update by Zuguang Gu <jokergoo@gmail.com> 2022-08-05 17:28:38 +0200;
  • 079e1e6 update by Zuguang Gu <jokergoo@gmail.com> 2022-07-28 09:52:06 +0200;
  • 471a214 comb_col is now correctly assigned when the combination matrix is transposed by Zuguang Gu <jokergoo@gmail.com> 2022-07-27 11:51:25 +0200;
  • c94e524 add max_density argument by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:42:56 +0200;
  • 5cefa67 rename to anno_textbox() by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:11:58 +0200;
  • 2bb14c9 use foreach by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 15:27:23 +0200;
  • 1ad73d8 automatically recognize Jupyter environment by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 13:42:14 +0200;
  • f7aacf2 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:32 +0200;
  • 518ef04 column_title_rot can be any degree value by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:27 +0200;
  • 9363798 Merge pull request <a href="#926">#926</a> from bioturing/fix_libpath by Zuguang Gu <jokergoo@gmail.com> 2022-05-30 17:20:08 +0200;
  • 8564ce7 better .libPath env setup by trile965 <lequangminhtri@gmail.com> 2022-05-24 18:10:19 +0800;
  • 94b8528 fix libpath in complex heatmap by trile965 <lequangminhtri@gmail.com> 2022-05-24 13:51:38 +0800;
  • a29337a do not adjust cols when rect_gp = gpar(type='none') by Zuguang Gu <jokergoo@gmail.com> 2022-05-19 21:54:44 +0200;
  • 887aa53 merge with bioc by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:18:56 +0200;
  • 18765bd add fontfamily/fontface to pheatmap() by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:17:53 +0200;
  • 183ec4f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
  • 8a5f060 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
  • 230adc7 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:38 +0200;
  • 4686003 reduce at and label for heatmap_legend_param according to col by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:28 +0200;
  • e8e78cc Merge pull request <a href="#902">#902</a> from Goultard59/master by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 09:35:41 +0200;
  • 90ca6bf Update HeatmapAnnotation.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:10:42 +0200;
  • 2d6eda6 Update default_axis_param.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:08:09 +0200;
  • 641da76 Update color_mapping_legend-ColorMapping-method.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:05:41 +0200;
  • 31cf716 fixed warnings by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 21:28:24 +0200;
  • 425c85f global variables in cell_fun are automatically saved by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 17:52:11 +0200;
  • 22ab8e0 add setAs() to convert a list of heatmap to HeatmapList object by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 22:02:54 +0100;
  • 64c1050 delete wrong character by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 21:49:42 +0100;
  • ab225a0 add na.rm = TRUE in quantile() by Zuguang Gu <jokergoo@gmail.com> 2022-03-23 17:30:55 +0100;
  • 267a221 add more annotation functions by Zuguang Gu <jokergoo@gmail.com> 2022-02-18 20:51:49 +0100;
  • 6f35b6e Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:58 +0100;
  • 8ed806b add show_name in anno_empty() by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:48 +0100;
  • 73d397a Update CITATION by Zuguang Gu <jokergoo@gmail.com> 2022-01-16 16:47:13 +0100;
  • 826b321 reset the ylim when all values are the same by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:28:45 +0100;
  • 131f321 change argument length to length.out in seq() by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:06:31 +0100;
  • 5c6415b recycle_gp(): now consider n = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-11-13 11:42:20 +0100;
  • 6c3ae54 annotation_label accepts expression objects by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 19:36:48 +0100;
  • 8711e88 version bump by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:28:05 +0100;
  • 48de291 Merge branch 'master' of git.bioconductor.org:packages/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:39 +0100;
  • 2d09112 add a new COLOR global option by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:29 +0100;
  • e5e685f bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
  • 170df82 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
  • c1b9be2 update by Zuguang Gu <jokergoo@gmail.com> 2021-10-25 12:18:45 +0200;
  • 9c277dd adjust horizontal legend by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 11:23:58 +0200;
  • 5fd49ed add plot() method by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 10:38:35 +0200;
  • 80d025e add new argument 'beside' in 'anno_barplot()' by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 13:13:16 +0200;
  • 324ca36 restrict the size of the temp raster image by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 11:20:28 +0200;
  • a9d34f2 do not convert legend labels to characters by Zuguang Gu <jokergoo@gmail.com> 2021-09-20 12:10:13 +0200;
  • 39246e0 fixed a bug of missing right annotation legends for vertically concatenated heatmaps by Zuguang Gu <jokergoo@gmail.com> 2021-09-09 13:56:42 +0200;
  • 3c344f4 update by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 15:02:52 +0200;
  • 3e2efb6 set max scale to 1 when dendrogram height is zero by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 10:28:57 +0200;
  • 01e3bc5 adjust when numbers_rot = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 22:30:13 +0200;
  • 658e860 add a new argument cell_fun in AnnotationFunction() by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 10:55:06 +0200;
  • acb4f4b correct variable name by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:12:01 +0200;
  • e79e87d axis labels are automatical formatted for genomic coordinates by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:05:45 +0200;
  • 00490f9 add numbers to the barplot annotations by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 14:22:45 +0200;
  • 7e46f0a neighbour annotation grids are merged if they have the same value by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 10:49:11 +0200;
  • a5c8bc3 update docs by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:43:09 +0200;
  • f64d04a fixed a bug of legend grids were not correctly recycled by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:42:49 +0200;
  • ddff956 update tests by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:24:25 +0200;
  • 673f9fc merge by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:10:18 +0200;
  • b836d24 support GRangesList objects in make_comb_mat by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 12:26:51 +0200;
  • 7e066ad set wrap = TRUE when using grid.grabExpr() by Zuguang Gu <jokergoo@gmail.com> 2021-07-26 11:27:34 +0200;
  • f2c95db pheatmap do not call draw by default by Zuguang Gu <jokergoo@gmail.com> 2021-07-22 22:35:41 +0200;
  • ad1e65d check dimension names of matrices and annotations by Zuguang Gu <jokergoo@gmail.com> 2021-07-13 17:48:22 +0200;
  • 7bb996c check dimension names of matrices and annotations by Zuguang Gu <jokergoo@gmail.com> 2021-07-13 17:43:05 +0200;
  • 1bd27f8 add rmarkdown to Suggests by Zuguang Gu <jokergoo@gmail.com> 2021-07-03 10:17:56 +0200;
  • 11cee60 fixed a bug for bg_col for transposed matrix in UpSet() by Zuguang Gu <jokergoo@gmail.com> 2021-07-02 12:43:50 +0200;
  • eead60d change actions by Zuguang Gu <jokergoo@gmail.com> 2021-07-01 15:40:44 +0200;
  • 92b2098 update action by Zuguang Gu <jokergoo@gmail.com> 2021-07-01 13:39:42 +0200;
  • 7933045 update action by Zuguang Gu <jokergoo@gmail.com> 2021-07-01 13:36:37 +0200;
  • 184a2a2 use github action by Zuguang Gu <jokergoo@gmail.com> 2021-07-01 13:29:17 +0200;
  • 99dacbb bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:12:28 +0000;
  • 1bd0c3b (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:12:28 +0000;
  • 7b75119 version bump by Zuguang <jokergoo@gmail.com> 2021-05-04 15:55:58 +0200;
  • 649763b pheatmap can now be used with do.call() by Zuguang <jokergoo@gmail.com> 2021-04-16 09:42:28 +0200;
  • b217411 change -unit to -1*unit for compatible with grid3 by Zuguang <jokergoo@gmail.com> 2021-04-14 16:04:10 +0200;
  • e412dfc add show_name argument in anno_text() by Zuguang <jokergoo@gmail.com> 2021-04-07 10:47:48 +0200;
  • fc04898 add show_name argument in anno_text() by Zuguang <jokergoo@gmail.com> 2021-04-07 10:47:30 +0200;
  • 6fd997f anno_simple(): text symbol can have nchar > 1 by Zuguang <jokergoo@gmail.com> 2021-04-07 10:20:24 +0200;
  • c27d566 update by Zuguang <jokergoo@gmail.com> 2021-04-06 12:25:43 +0200;
  • a03a6df add run_draw argument in translation functions by Zuguang <jokergoo@gmail.com> 2021-04-05 13:46:29 +0200;
  • 55ff815 increase version number by Zuguang <jokergoo@gmail.com> 2021-04-04 15:30:00 +0200;
  • 06fc3be submit to bioc by Zuguang <jokergoo@gmail.com> 2021-04-04 15:29:15 +0200;
  • 32e1e0e Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang <jokergoo@gmail.com> 2021-03-28 10:15:05 +0200;
  • 13bd2ba update by Zuguang <jokergoo@gmail.com> 2021-03-28 10:14:55 +0200;
  • 60f8c48 Update README.md by Zuguang Gu <jokergoo@gmail.com> 2021-03-25 10:41:27 +0100;
  • 56b3b3e update docs by Zuguang <jokergoo@gmail.com> 2021-03-25 10:14:00 +0100;
  • 7caac70 rename rect3D to bar3D by Zuguang <jokergoo@gmail.com> 2021-03-24 21:15:32 +0100;
  • 49e4fa6 add stat argument in frequencyHeatmap() by Zuguang <jokergoo@gmail.com> 2021-03-24 20:56:37 +0100;
  • c6a77a8 add stat argument in frequencyHeatmap() by Zuguang Gu <jokergoo@gmail.com> 2021-03-24 20:13:07 +0100;
  • fafbf00 Update 3d.R by Zuguang Gu <jokergoo@gmail.com> 2021-03-24 15:58:05 +0100;
  • 3509fd8 Update README.md by Zuguang Gu <jokergoo@gmail.com> 2021-03-24 10:14:13 +0100;
  • 613c44f add Heatmap3d() by Zuguang <jokergoo@gmail.com> 2021-03-24 10:05:20 +0100;
  • 914fc62 fixed a bug of using do.call() for rowAnnotation() by Zuguang <jokergoo@gmail.com> 2021-03-23 10:09:02 +0100;
  • 804a8e7 version bump by Zuguang <jokergoo@gmail.com> 2021-03-18 16:12:38 +0100;
  • b98a93e update on bioc by Zuguang <jokergoo@gmail.com> 2021-03-18 16:11:21 +0100;
  • 59e468c add 'graphics' argument in 'anno_block()' by Zuguang Gu <jokergoo@gmail.com> 2021-03-11 10:41:22 +0100;
  • f95a69b update background in Heatmaplist object by Zuguang Gu <jokergoo@gmail.com> 2021-03-04 20:15:48 +0100;
  • a781db1 class labels are kept for cluster_between_groups and cluster_within_group by Zuguang Gu <jokergoo@gmail.com> 2021-03-04 19:57:30 +0100;