Bioconductor Code: ComplexHeatmap

Graph of ComplexHeatmap

f54043a (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:42:36 -0400;
d3c15b6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:42:36 -0400;
db26314 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:43 -0400;
01eb55c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:43 -0400;
ae0ec42 legends by Zuguang Gu <jokergoo@gmail.com> 2023-04-25 10:00:15 +0200;
cf794d6 convert to data frame by Zuguang Gu <jokergoo@gmail.com> 2023-04-13 12:22:42 +0200;
cf36750 anno_mark(): labels can be duplicated by Zuguang Gu <jokergoo@gmail.com> 2023-04-03 14:34:13 +0200;
aa55a66 row_dend/column_dend support extracting dendrograms on slices by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 15:04:58 +0200;
772822f update by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 14:06:27 +0200;
8975772 legend_gp also controls line color, width and style by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:46:56 +0200;
9463d02 merge by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:25:45 +0200;
17b2944 wrap all messages into error() by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:25:16 +0200;
62278db Merge branch 'master' into devel by Zuguang Gu <jokergoo@gmail.com> 2023-03-24 13:33:25 +0100;
ead3915 closeCluster by Zuguang Gu <jokergoo@gmail.com> 2023-03-24 13:33:03 +0100;
4f8d893 merge with remote by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:32:19 +0100;
56babaf Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:31:32 +0100;
30566f4 update by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:31:21 +0100;
ed8fcfb increase iter.max to 50 by Zuguang Gu <jokergoo@gmail.com> 2023-03-07 10:16:52 +0100;
ea94b33 update by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 15:34:09 +0100;
10b9ec1 Legend(): colors are correctly calculated when differences between 'at' are not equal by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 15:00:01 +0100;
46db5f7 anno_numeric(): fill can be correctly set as a vector by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 14:16:24 +0100;
4ce0e3b add a new argument 'tick_length' in Legend() by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 13:51:48 +0100;
7f95b79 fixed a bug with negative units by Zuguang Gu <jokergoo@gmail.com> 2022-12-08 15:49:02 +0100;
46d41b9 correctly calculate the max width/height of a vector of texts by Zuguang Gu <jokergoo@gmail.com> 2022-11-24 14:51:12 +0100;
debb53d NA is allowed in pch in legend by Zuguang Gu <jokergoo@gmail.com> 2022-11-24 13:45:17 +0100;
ff1fe53 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:24 -0400;
57fcaa0 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:24 -0400;
136d94d check at in heatmap_legend_param and alter_fun by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 12:11:13 +0200;
ac11934 fixed a bug where size of column titles was wrongly calculated by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 11:23:08 +0200;
8e8f4ee add a new add_points argument in anno_boxplot() by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 10:59:57 +0200;
15a7586 anno_barplot(): fixed a bug when besides = TRUE by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 10:33:37 +0200;
2d6e270 update version by Zuguang Gu <jokergoo@gmail.com> 2022-10-15 10:05:33 +0200;
cdb9fb7 anno_density(): fixed a bug in heatmap density by Zuguang Gu <jokergoo@gmail.com> 2022-10-06 10:26:08 +0200;
82309c0 print message when the number of colors is the same as the number of unique values in the matrix by Zuguang Gu <jokergoo@gmail.com> 2022-09-29 09:58:52 +0200;
2a24723 anno_density(): fixed a bug where 'xlim' is ignored for 'heatmap' by Zuguang Gu <jokergoo@gmail.com> 2022-09-28 15:59:00 +0200;
b3314e0 add pct_include argument by Zuguang Gu <jokergoo@gmail.com> 2022-09-02 09:57:24 +0200;
0e88b1d bg_col can be set to a vector of length more than two by Zuguang Gu <jokergoo@gmail.com> 2022-09-01 21:33:43 +0200;
8f16338 fixed a bug of annotation legens when 'df' is set by Zuguang Gu <jokergoo@gmail.com> 2022-08-31 16:37:52 +0200;
2c5fe70 (origin/RELEASE_3_15, RELEASE_3_15) update citation by Zuguang Gu <jokergoo@gmail.com> 2022-08-08 21:31:16 +0200;
f6edeaa update by Zuguang Gu <jokergoo@gmail.com> 2022-08-05 17:28:38 +0200;
079e1e6 update by Zuguang Gu <jokergoo@gmail.com> 2022-07-28 09:52:06 +0200;
471a214 comb_col is now correctly assigned when the combination matrix is transposed by Zuguang Gu <jokergoo@gmail.com> 2022-07-27 11:51:25 +0200;
c94e524 add max_density argument by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:42:56 +0200;
5cefa67 rename to anno_textbox() by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:11:58 +0200;
2bb14c9 use foreach by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 15:27:23 +0200;
1ad73d8 automatically recognize Jupyter environment by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 13:42:14 +0200;
f7aacf2 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:32 +0200;
518ef04 column_title_rot can be any degree value by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:27 +0200;
9363798 Merge pull request <a href="#926">#926</a> from bioturing/fix_libpath by Zuguang Gu <jokergoo@gmail.com> 2022-05-30 17:20:08 +0200;
8564ce7 better .libPath env setup by trile965 <lequangminhtri@gmail.com> 2022-05-24 18:10:19 +0800;
94b8528 fix libpath in complex heatmap by trile965 <lequangminhtri@gmail.com> 2022-05-24 13:51:38 +0800;
a29337a do not adjust cols when rect_gp = gpar(type='none') by Zuguang Gu <jokergoo@gmail.com> 2022-05-19 21:54:44 +0200;
887aa53 merge with bioc by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:18:56 +0200;
18765bd add fontfamily/fontface to pheatmap() by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:17:53 +0200;
183ec4f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
8a5f060 bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
230adc7 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:38 +0200;
4686003 reduce at and label for heatmap_legend_param according to col by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:28 +0200;
e8e78cc Merge pull request <a href="#902">#902</a> from Goultard59/master by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 09:35:41 +0200;
90ca6bf Update HeatmapAnnotation.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:10:42 +0200;
2d6eda6 Update default_axis_param.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:08:09 +0200;
641da76 Update color_mapping_legend-ColorMapping-method.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:05:41 +0200;
31cf716 fixed warnings by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 21:28:24 +0200;
425c85f global variables in cell_fun are automatically saved by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 17:52:11 +0200;
22ab8e0 add setAs() to convert a list of heatmap to HeatmapList object by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 22:02:54 +0100;
64c1050 delete wrong character by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 21:49:42 +0100;
ab225a0 add na.rm = TRUE in quantile() by Zuguang Gu <jokergoo@gmail.com> 2022-03-23 17:30:55 +0100;
267a221 add more annotation functions by Zuguang Gu <jokergoo@gmail.com> 2022-02-18 20:51:49 +0100;
6f35b6e Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:58 +0100;
8ed806b add show_name in anno_empty() by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:48 +0100;
73d397a Update CITATION by Zuguang Gu <jokergoo@gmail.com> 2022-01-16 16:47:13 +0100;
826b321 reset the ylim when all values are the same by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:28:45 +0100;
131f321 change argument length to length.out in seq() by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:06:31 +0100;
5c6415b recycle_gp(): now consider n = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-11-13 11:42:20 +0100;
6c3ae54 annotation_label accepts expression objects by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 19:36:48 +0100;
8711e88 version bump by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:28:05 +0100;
48de291 Merge branch 'master' of git.bioconductor.org:packages/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:39 +0100;
2d09112 add a new COLOR global option by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:29 +0100;
e5e685f bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
170df82 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
c1b9be2 update by Zuguang Gu <jokergoo@gmail.com> 2021-10-25 12:18:45 +0200;
9c277dd adjust horizontal legend by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 11:23:58 +0200;
5fd49ed add plot() method by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 10:38:35 +0200;
80d025e add new argument 'beside' in 'anno_barplot()' by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 13:13:16 +0200;
324ca36 restrict the size of the temp raster image by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 11:20:28 +0200;
a9d34f2 do not convert legend labels to characters by Zuguang Gu <jokergoo@gmail.com> 2021-09-20 12:10:13 +0200;
39246e0 fixed a bug of missing right annotation legends for vertically concatenated heatmaps by Zuguang Gu <jokergoo@gmail.com> 2021-09-09 13:56:42 +0200;
3c344f4 update by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 15:02:52 +0200;
3e2efb6 set max scale to 1 when dendrogram height is zero by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 10:28:57 +0200;
01e3bc5 adjust when numbers_rot = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 22:30:13 +0200;
658e860 add a new argument cell_fun in AnnotationFunction() by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 10:55:06 +0200;
acb4f4b correct variable name by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:12:01 +0200;
e79e87d axis labels are automatical formatted for genomic coordinates by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:05:45 +0200;
00490f9 add numbers to the barplot annotations by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 14:22:45 +0200;
7e46f0a neighbour annotation grids are merged if they have the same value by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 10:49:11 +0200;
a5c8bc3 update docs by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:43:09 +0200;
f64d04a fixed a bug of legend grids were not correctly recycled by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:42:49 +0200;
ddff956 update tests by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:24:25 +0200;
673f9fc merge by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:10:18 +0200;
b836d24 support GRangesList objects in make_comb_mat by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 12:26:51 +0200;