1. ComplexHeatmap
  2. Graph
Graph of ComplexHeatmap
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  • db26314f (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:43 -0400;
  • 01eb55ca (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:43 -0400;
  • ae0ec42c legends by Zuguang Gu <jokergoo@gmail.com> 2023-04-25 10:00:15 +0200;
  • cf794d68 convert to data frame by Zuguang Gu <jokergoo@gmail.com> 2023-04-13 12:22:42 +0200;
  • cf367501 anno_mark(): labels can be duplicated by Zuguang Gu <jokergoo@gmail.com> 2023-04-03 14:34:13 +0200;
  • aa55a660 row_dend/column_dend support extracting dendrograms on slices by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 15:04:58 +0200;
  • 772822f8 update by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 14:06:27 +0200;
  • 89757721 legend_gp also controls line color, width and style by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:46:56 +0200;
  • 9463d026 merge by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:25:45 +0200;
  • 17b2944f wrap all messages into error() by Zuguang Gu <jokergoo@gmail.com> 2023-03-31 13:25:16 +0200;
  • 62278db7 Merge branch 'master' into devel by Zuguang Gu <jokergoo@gmail.com> 2023-03-24 13:33:25 +0100;
  • ead3915f closeCluster by Zuguang Gu <jokergoo@gmail.com> 2023-03-24 13:33:03 +0100;
  • 4f8d8930 merge with remote by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:32:19 +0100;
  • 56babaf1 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:31:32 +0100;
  • 30566f46 update by Zuguang Gu <jokergoo@gmail.com> 2023-03-22 14:31:21 +0100;
  • ed8fcfb5 increase iter.max to 50 by Zuguang Gu <jokergoo@gmail.com> 2023-03-07 10:16:52 +0100;
  • ea94b338 update by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 15:34:09 +0100;
  • 10b9ec1c Legend(): colors are correctly calculated when differences between 'at' are not equal by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 15:00:01 +0100;
  • 46db5f7e anno_numeric(): fill can be correctly set as a vector by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 14:16:24 +0100;
  • 4ce0e3bf add a new argument 'tick_length' in Legend() by Zuguang Gu <jokergoo@gmail.com> 2023-02-08 13:51:48 +0100;
  • 7f95b797 fixed a bug with negative units by Zuguang Gu <jokergoo@gmail.com> 2022-12-08 15:49:02 +0100;
  • 46d41b98 correctly calculate the max width/height of a vector of texts by Zuguang Gu <jokergoo@gmail.com> 2022-11-24 14:51:12 +0100;
  • debb53de NA is allowed in pch in legend by Zuguang Gu <jokergoo@gmail.com> 2022-11-24 13:45:17 +0100;
  • ff1fe533 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:24 -0400;
  • 57fcaa04 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:24 -0400;
  • 136d94dc check at in heatmap_legend_param and alter_fun by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 12:11:13 +0200;
  • ac119349 fixed a bug where size of column titles was wrongly calculated by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 11:23:08 +0200;
  • 8e8f4ee8 add a new add_points argument in anno_boxplot() by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 10:59:57 +0200;
  • 15a75863 anno_barplot(): fixed a bug when besides = TRUE by Zuguang Gu <jokergoo@gmail.com> 2022-10-27 10:33:37 +0200;
  • 2d6e2705 update version by Zuguang Gu <jokergoo@gmail.com> 2022-10-15 10:05:33 +0200;
  • cdb9fb7f anno_density(): fixed a bug in heatmap density by Zuguang Gu <jokergoo@gmail.com> 2022-10-06 10:26:08 +0200;
  • 82309c0f print message when the number of colors is the same as the number of unique values in the matrix by Zuguang Gu <jokergoo@gmail.com> 2022-09-29 09:58:52 +0200;
  • 2a24723e anno_density(): fixed a bug where 'xlim' is ignored for 'heatmap' by Zuguang Gu <jokergoo@gmail.com> 2022-09-28 15:59:00 +0200;
  • b3314e0e add pct_include argument by Zuguang Gu <jokergoo@gmail.com> 2022-09-02 09:57:24 +0200;
  • 0e88b1da bg_col can be set to a vector of length more than two by Zuguang Gu <jokergoo@gmail.com> 2022-09-01 21:33:43 +0200;
  • 8f163383 fixed a bug of annotation legens when 'df' is set by Zuguang Gu <jokergoo@gmail.com> 2022-08-31 16:37:52 +0200;
  • 2c5fe707 (origin/RELEASE_3_15, RELEASE_3_15) update citation by Zuguang Gu <jokergoo@gmail.com> 2022-08-08 21:31:16 +0200;
  • f6edeaa1 update by Zuguang Gu <jokergoo@gmail.com> 2022-08-05 17:28:38 +0200;
  • 079e1e65 update by Zuguang Gu <jokergoo@gmail.com> 2022-07-28 09:52:06 +0200;
  • 471a2143 comb_col is now correctly assigned when the combination matrix is transposed by Zuguang Gu <jokergoo@gmail.com> 2022-07-27 11:51:25 +0200;
  • c94e524a add max_density argument by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:42:56 +0200;
  • 5cefa674 rename to anno_textbox() by Zuguang Gu <jokergoo@gmail.com> 2022-06-15 12:11:58 +0200;
  • 2bb14c91 use foreach by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 15:27:23 +0200;
  • 1ad73d81 automatically recognize Jupyter environment by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 13:42:14 +0200;
  • f7aacf23 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:32 +0200;
  • 518ef04f column_title_rot can be any degree value by Zuguang Gu <jokergoo@gmail.com> 2022-05-31 11:48:27 +0200;
  • 93637988 Merge pull request <a href="#926">#926</a> from bioturing/fix_libpath by Zuguang Gu <jokergoo@gmail.com> 2022-05-30 17:20:08 +0200;
  • 8564ce74 better .libPath env setup by trile965 <lequangminhtri@gmail.com> 2022-05-24 18:10:19 +0800;
  • 94b85289 fix libpath in complex heatmap by trile965 <lequangminhtri@gmail.com> 2022-05-24 13:51:38 +0800;
  • a29337a0 do not adjust cols when rect_gp = gpar(type='none') by Zuguang Gu <jokergoo@gmail.com> 2022-05-19 21:54:44 +0200;
  • 887aa533 merge with bioc by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:18:56 +0200;
  • 18765bd5 add fontfamily/fontface to pheatmap() by Zuguang Gu <jokergoo@gmail.com> 2022-05-10 11:17:53 +0200;
  • 183ec4fa bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
  • 8a5f060b bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:37 +0000;
  • 230adc7c Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:38 +0200;
  • 46860032 reduce at and label for heatmap_legend_param according to col by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 18:11:28 +0200;
  • e8e78ccc Merge pull request <a href="#902">#902</a> from Goultard59/master by Zuguang Gu <jokergoo@gmail.com> 2022-04-12 09:35:41 +0200;
  • 90ca6bfa Update HeatmapAnnotation.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:10:42 +0200;
  • 2d6eda6d Update default_axis_param.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:08:09 +0200;
  • 641da760 Update color_mapping_legend-ColorMapping-method.Rd by Goultard59 <goultard59@gmail.com> 2022-04-08 15:05:41 +0200;
  • 31cf7167 fixed warnings by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 21:28:24 +0200;
  • 425c85f9 global variables in cell_fun are automatically saved by Zuguang Gu <jokergoo@gmail.com> 2022-04-02 17:52:11 +0200;
  • 22ab8e05 add setAs() to convert a list of heatmap to HeatmapList object by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 22:02:54 +0100;
  • 64c1050a delete wrong character by Zuguang Gu <jokergoo@gmail.com> 2022-03-24 21:49:42 +0100;
  • ab225a0c add na.rm = TRUE in quantile() by Zuguang Gu <jokergoo@gmail.com> 2022-03-23 17:30:55 +0100;
  • 267a2219 add more annotation functions by Zuguang Gu <jokergoo@gmail.com> 2022-02-18 20:51:49 +0100;
  • 6f35b6e6 Merge branch 'master' of github.com:jokergoo/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:58 +0100;
  • 8ed806b6 add show_name in anno_empty() by Zuguang Gu <jokergoo@gmail.com> 2022-02-03 10:53:48 +0100;
  • 73d397a2 Update CITATION by Zuguang Gu <jokergoo@gmail.com> 2022-01-16 16:47:13 +0100;
  • 826b321e reset the ylim when all values are the same by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:28:45 +0100;
  • 131f3219 change argument length to length.out in seq() by Zuguang Gu <jokergoo@gmail.com> 2021-11-26 15:06:31 +0100;
  • 5c6415ba recycle_gp(): now consider n = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-11-13 11:42:20 +0100;
  • 6c3ae544 annotation_label accepts expression objects by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 19:36:48 +0100;
  • 8711e88f version bump by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:28:05 +0100;
  • 48de291f Merge branch 'master' of git.bioconductor.org:packages/ComplexHeatmap by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:39 +0100;
  • 2d091123 add a new COLOR global option by Zuguang Gu <jokergoo@gmail.com> 2021-11-08 13:27:29 +0100;
  • e5e685f2 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
  • 170df82a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:39 +0000;
  • c1b9be21 update by Zuguang Gu <jokergoo@gmail.com> 2021-10-25 12:18:45 +0200;
  • 9c277dda adjust horizontal legend by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 11:23:58 +0200;
  • 5fd49ed1 add plot() method by Zuguang Gu <jokergoo@gmail.com> 2021-09-29 10:38:35 +0200;
  • 80d025e2 add new argument 'beside' in 'anno_barplot()' by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 13:13:16 +0200;
  • 324ca36c restrict the size of the temp raster image by Zuguang Gu <jokergoo@gmail.com> 2021-09-28 11:20:28 +0200;
  • a9d34f2e do not convert legend labels to characters by Zuguang Gu <jokergoo@gmail.com> 2021-09-20 12:10:13 +0200;
  • 39246e02 fixed a bug of missing right annotation legends for vertically concatenated heatmaps by Zuguang Gu <jokergoo@gmail.com> 2021-09-09 13:56:42 +0200;
  • 3c344f41 update by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 15:02:52 +0200;
  • 3e2efb6e set max scale to 1 when dendrogram height is zero by Zuguang Gu <jokergoo@gmail.com> 2021-09-08 10:28:57 +0200;
  • 01e3bc5b adjust when numbers_rot = 0 by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 22:30:13 +0200;
  • 658e8600 add a new argument cell_fun in AnnotationFunction() by Zuguang Gu <jokergoo@gmail.com> 2021-08-04 10:55:06 +0200;
  • acb4f4b2 correct variable name by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:12:01 +0200;
  • e79e87db axis labels are automatical formatted for genomic coordinates by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 23:05:45 +0200;
  • 00490f9b add numbers to the barplot annotations by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 14:22:45 +0200;
  • 7e46f0a9 neighbour annotation grids are merged if they have the same value by Zuguang Gu <jokergoo@gmail.com> 2021-08-03 10:49:11 +0200;
  • a5c8bc30 update docs by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:43:09 +0200;
  • f64d04a9 fixed a bug of legend grids were not correctly recycled by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 21:42:49 +0200;
  • ddff956f update tests by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:24:25 +0200;
  • 673f9fc2 merge by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 13:10:18 +0200;
  • b836d242 support GRangesList objects in make_comb_mat by Zuguang Gu <jokergoo@gmail.com> 2021-08-02 12:26:51 +0200;
  • 7e066ad5 set wrap = TRUE when using grid.grabExpr() by Zuguang Gu <jokergoo@gmail.com> 2021-07-26 11:27:34 +0200;
  • f2c95dbb pheatmap do not call draw by default by Zuguang Gu <jokergoo@gmail.com> 2021-07-22 22:35:41 +0200;