1. ComplexHeatmap
  2. DESCRIPTION
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:38:43
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.16.0
4 
+Version: 2.17.0
5 5 
 Date: 2023-04-25
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:38:43
Showing 1 changed files
DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.15.4
4 
+Version: 2.16.0
5 5 
 Date: 2023-04-25
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
Browse code

legends

Zuguang Gu authored on 25/04/2023 08:00:15
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DESCRIPTION
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.15.3
5 
-Date: 2023-03-31
4 
+Version: 2.15.4
5 
+Date: 2023-04-25
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

wrap all messages into error()

Zuguang Gu authored on 31/03/2023 11:25:16
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DESCRIPTION
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.15.2
5 
-Date: 2023-03-22
4 
+Version: 2.15.3
5 
+Date: 2023-03-31
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

update

Zuguang Gu authored on 22/03/2023 13:31:21
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DESCRIPTION
History View file @ 30566f46
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.15.1
5 
-Date: 2022-11-24
4 
+Version: 2.15.2
5 
+Date: 2023-03-22
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
... ... 
@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15 
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 
-    gridGraphics, gplots, rmarkdown, Cairo
16 
+    gridGraphics, gplots, rmarkdown, Cairo, magick
17 17 
 VignetteBuilder: knitr
18 18 
 Description: Complex heatmaps are efficient to visualize associations
19 19 
     between different sources of data sets and reveal potential patterns.
Browse code

NA is allowed in pch in legend

Zuguang Gu authored on 24/11/2022 12:45:17
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DESCRIPTION
History View file @ debb53de
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.13.4
5 
-Date: 2022-10-15
4 
+Version: 2.15.1
5 
+Date: 2022-11-24
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

anno_barplot(): fixed a bug when besides = TRUE

Zuguang Gu authored on 27/10/2022 08:33:37
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DESCRIPTION
History View file @ 15a75863
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.13.3
4 
+Version: 2.13.4
5 5 
 Date: 2022-10-15
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
Browse code

update version

Zuguang Gu authored on 15/10/2022 08:05:33
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DESCRIPTION
History View file @ 2d6e2705
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.13.2
5 
-Date: 2022-08-31
4 
+Version: 2.13.3
5 
+Date: 2022-10-15
6 6 
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 7 
                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

anno_density(): fixed a bug in heatmap density

Zuguang Gu authored on 06/10/2022 08:26:08
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DESCRIPTION
History View file @ cdb9fb7f
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@@ -3,8 +3,8 @@ Type: Package
3 3 
 Title: Make Complex Heatmaps
4 4 
 Version: 2.13.2
5 5 
 Date: 2022-08-31
6 
-Author: Zuguang Gu
7 
-Maintainer: Zuguang Gu <z.gu@dkfz.de>
6 
+Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
7 
+                  comment = c('ORCID'="0000-0002-7395-8709"))
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9 
 Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
10 10 
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
Browse code

fixed a bug of annotation legens when 'df' is set

Zuguang Gu authored on 31/08/2022 14:37:52
Showing 1 changed files
DESCRIPTION
History View file @ 8f163383
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.13.1
5 
-Date: 2021-05-10
4 
+Version: 2.13.2
5 
+Date: 2022-08-31
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

merge with bioc

Zuguang Gu authored on 10/05/2022 09:18:56
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Browse code

bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:24:37
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DESCRIPTION
History View file @ 183ec4fa
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.12.0
4 
+Version: 2.13.0
5 5 
 Date: 2021-11-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:24:37
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DESCRIPTION
History View file @ 8a5f060b
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.11.1
4 
+Version: 2.12.0
5 5 
 Date: 2021-11-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

reduce at and label for heatmap_legend_param according to col

Zuguang Gu authored on 12/04/2022 16:11:28
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DESCRIPTION
History View file @ 46860032
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.11.1
4 
+Version: 2.11.2
5 5 
 Date: 2021-11-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

fixed warnings

Zuguang Gu authored on 02/04/2022 19:28:24
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DESCRIPTION
History View file @ 31cf7167
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@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9 
 Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
10 10 
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 
-    digest, IRanges, matrixStats, foreach, doParallel
11 
+    digest, IRanges, matrixStats, foreach, doParallel, codetools
12 12 
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

add show_name in anno_empty()

Zuguang Gu authored on 03/02/2022 09:53:48
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DESCRIPTION
History View file @ 8ed806b6
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@@ -6,7 +6,7 @@ Date: 2021-11-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 
-Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
9 
+Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
10 10 
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 11 
     digest, IRanges, matrixStats, foreach, doParallel
12 12 
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
Browse code

version bump

Zuguang Gu authored on 08/11/2021 12:28:05
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DESCRIPTION
History View file @ 8711e88f
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.11.0
5 
-Date: 2021-10-17
4 
+Version: 2.11.1
5 
+Date: 2021-11-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:19:39
Showing 1 changed files
DESCRIPTION
History View file @ e5e685f2
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.10.0
4 
+Version: 2.11.0
5 5 
 Date: 2021-10-17
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:19:39
Showing 1 changed files
DESCRIPTION
History View file @ 170df82a
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.9.4
4 
+Version: 2.10.0
5 5 
 Date: 2021-10-17
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

update

Zuguang Gu authored on 25/10/2021 10:18:45
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DESCRIPTION
History View file @ c1b9be21
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 4 
 Version: 2.9.4
5 
-Date: 2021-09-08
5 
+Date: 2021-10-17
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

update

Zuguang Gu authored on 08/09/2021 13:02:52
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DESCRIPTION
History View file @ 3c344f41
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.9.3
5 
-Date: 2021-08-02
4 
+Version: 2.9.4
5 
+Date: 2021-09-08
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

merge

Zuguang Gu authored on 02/08/2021 11:10:18
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Browse code

support GRangesList objects in make_comb_mat

Zuguang Gu authored on 02/08/2021 10:26:51
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DESCRIPTION
History View file @ b836d242
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@@ -8,12 +8,12 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9 
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10 
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 
-    Cairo, digest, IRanges, matrixStats, foreach, doParallel
11 
+    digest, IRanges, matrixStats, foreach, doParallel
12 12 
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15 
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 
-    gridGraphics, gplots, rmarkdown
16 
+    gridGraphics, gplots, rmarkdown, Cairo
17 17 
 VignetteBuilder: knitr
18 18 
 Description: Complex heatmaps are efficient to visualize associations
19 19 
     between different sources of data sets and reveal potential patterns.
Browse code

pheatmap do not call draw by default

Zuguang Gu authored on 22/07/2021 20:35:41
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DESCRIPTION
History View file @ f2c95dbb
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.9.2
5 
-Date: 2021-07-13
4 
+Version: 2.9.3
5 
+Date: 2021-07-22
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

check dimension names of matrices and annotations

Zuguang Gu authored on 13/07/2021 15:43:05
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DESCRIPTION
History View file @ 7bb996c8
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.9.1
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-Date: 2021-05-04
4 
+Version: 2.9.2
5 
+Date: 2021-07-13
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Browse code

add rmarkdown to Suggests

Zuguang Gu authored on 03/07/2021 08:17:56
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DESCRIPTION
History View file @ 1bd27f86
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15 
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 
-    gridGraphics, gplots
16 
+    gridGraphics, gplots, rmarkdown
17 17 
 VignetteBuilder: knitr
18 18 
 Description: Complex heatmaps are efficient to visualize associations
19 19 
     between different sources of data sets and reveal potential patterns.
Browse code

use github action

Zuguang Gu authored on 01/07/2021 11:29:17
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DESCRIPTION
History View file @ 184a2a24
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@@ -1,11 +1,11 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.7.11
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+Version: 2.9.1
5 5 
 Date: 2021-05-04
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 
-Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
8 
+Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9 
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10 
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 11 
     Cairo, digest, IRanges, matrixStats, foreach, doParallel
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:12:28
Showing 1 changed files
DESCRIPTION
History View file @ 99dacbbf
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.8.0
4 
+Version: 2.9.0
5 5 
 Date: 2021-05-04
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:12:28
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DESCRIPTION
History View file @ 1bd0c3b2
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
4 
-Version: 2.7.11
4 
+Version: 2.8.0
5 5 
 Date: 2021-05-04
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

version bump

Zuguang authored on 04/05/2021 13:55:58
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DESCRIPTION
History View file @ 7b751198
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.10.9002
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-Date: 2021-4-14
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+Version: 2.7.11
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+Date: 2021-05-04
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

change -unit to -1*unit for compatible with grid3

Zuguang authored on 14/04/2021 14:04:10
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DESCRIPTION
History View file @ b2174116
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.10.9001
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-Date: 2021-4-6
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+Version: 2.7.10.9002
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+Date: 2021-4-14
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

update

Zuguang authored on 06/04/2021 10:25:43
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DESCRIPTION
History View file @ c27d5665
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.10.9000
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-Date: 2021-4-4
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+Version: 2.7.10.9001
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+Date: 2021-4-6
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

increase version number

Zuguang authored on 04/04/2021 13:30:00
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DESCRIPTION
History View file @ 55ff8153
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.9
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-Date: 2021-3-28
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+Version: 2.7.10.9000
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+Date: 2021-4-4
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

submit to bioc

Zuguang authored on 04/04/2021 13:29:15
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DESCRIPTION
History View file @ 06fc3be7
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@@ -1,7 +1,7 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.9.1007
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+Version: 2.7.9
5 5 
 Date: 2021-3-28
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

update

Zuguang authored on 28/03/2021 08:14:55
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DESCRIPTION
History View file @ 13bd2ba9
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.9.1006
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-Date: 2021-3-25
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+Version: 2.7.9.1007
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+Date: 2021-3-28
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

update docs

Zuguang authored on 25/03/2021 09:14:00
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DESCRIPTION
History View file @ 56b3b3ea
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.9.1005
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-Date: 2021-3-24
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+Version: 2.7.9.1006
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+Date: 2021-3-25
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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rename rect3D to bar3D

Zuguang authored on 24/03/2021 20:15:32
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 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1004
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+Version: 2.7.9.1005
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 Date: 2021-3-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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add stat argument in frequencyHeatmap()

Zuguang authored on 24/03/2021 19:56:37
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 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1003
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 Date: 2021-3-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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add Heatmap3d()

Zuguang authored on 24/03/2021 09:05:20
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1002
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-Date: 2021-3-23
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+Version: 2.7.9.1003
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+Date: 2021-3-24
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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fixed a bug of using do.call() for rowAnnotation()

Zuguang authored on 23/03/2021 09:09:02
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1 1 
 Package: ComplexHeatmap
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3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.9.1000
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-Date: 2021-3-18
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+Version: 2.7.9.1002
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+Date: 2021-3-23
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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version bump

Zuguang authored on 18/03/2021 15:12:38
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.8
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 Date: 2021-3-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update on bioc

Zuguang authored on 18/03/2021 15:11:21
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1 1 
 Package: ComplexHeatmap
2 2 
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3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.8.1000
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-Date: 2021-2-25
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+Version: 2.7.8
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+Date: 2021-3-18
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

update

Zuguang Gu authored on 25/02/2021 14:04:04
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.7
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-Date: 2021-2-20
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+Version: 2.7.8.1000
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+Date: 2021-2-25
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

update to bioc

Zuguang Gu authored on 21/02/2021 07:46:40
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1 1 
 Package: ComplexHeatmap
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 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.7.1002
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+Version: 2.7.7
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 Date: 2021-2-20
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

names in the vector are recovered in when alter_fun is defined as a single function

Zuguang Gu authored on 20/02/2021 09:02:50
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.7.1001
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-Date: 2021-2-18
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+Version: 2.7.7.1002
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+Date: 2021-2-20
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

reset the default of border_color

Zuguang Gu authored on 18/02/2021 21:23:04
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.7.1000
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+Version: 2.7.7.1001
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 Date: 2021-2-18
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

proper defaults are updated

Zuguang Gu authored on 18/02/2021 20:53:00
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1 1 
 Package: ComplexHeatmap
2 2 
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3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1010
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-Date: 2021-2-12
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+Version: 2.7.7.1000
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+Date: 2021-2-18
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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draw() stores legend-related configurations

Zuguang Gu authored on 12/02/2021 19:42:01
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1009
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-Date: 2021-2-9
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+Version: 2.7.6.1010
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+Date: 2021-2-12
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update docs

Zuguang Gu authored on 09/02/2021 20:31:08
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.6.1008
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+Version: 2.7.6.1009
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 Date: 2021-2-9
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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number of split can be the same as number of matrix rows/columns

Zuguang Gu authored on 09/02/2021 20:14:10
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1 1 
 Package: ComplexHeatmap
2 2 
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3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1007
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+Version: 2.7.6.1008
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 Date: 2021-2-9
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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adjust_dend_by_x(): simplified the representation of units

Zuguang Gu authored on 09/02/2021 19:57:24
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1005
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+Version: 2.7.6.1007
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 Date: 2021-2-9
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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expression is properly processed for discrete legends

Zuguang Gu authored on 09/02/2021 13:53:11
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1004
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-Date: 2021-1-27
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+Version: 2.7.6.1005
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+Date: 2021-2-9
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9 
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 
-    RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11 
-    Cairo, digest, IRanges, matrixStats
10 
+    RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 
+    Cairo, digest, IRanges, matrixStats, foreach, doParallel
12 12 
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

fixed grid.grabExpr won't return to current device

Zuguang Gu authored on 27/01/2021 20:10:19
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1003
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-Date: 2021-1-26
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+Version: 2.7.6.1004
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+Date: 2021-1-27
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

remove zoom argument from anno_empty()

Zuguang Gu authored on 26/01/2021 16:10:51
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1002
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-Date: 2021-1-24
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+Version: 2.7.6.1003
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+Date: 2021-1-26
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update

Zuguang Gu authored on 24/01/2021 16:38:11
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.6.1001
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+Version: 2.7.6.1002
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 Date: 2021-1-24
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update docs

Zuguang Gu authored on 24/01/2021 16:37:47
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.6.1000
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+Version: 2.7.6.1001
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 Date: 2021-1-24
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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support to directly use grob in Legend()

Zuguang Gu authored on 24/01/2021 08:39:14
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1 1 
 Package: ComplexHeatmap
2 2 
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 Title: Make Complex Heatmaps
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-Version: 2.7.5
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-Date: 2021-1-22
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+Version: 2.7.6.1000
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+Date: 2021-1-24
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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version bump

Zuguang Gu authored on 22/01/2021 14:20:05
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.5.1001
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+Version: 2.7.5
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 Date: 2021-1-22
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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support kmeans_k in pheatmap()

Zuguang Gu authored on 22/01/2021 10:25:28
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.5.1000
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+Version: 2.7.5.1001
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 Date: 2021-1-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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anno_block(): add labels_offset and labels_just argument

Zuguang Gu authored on 22/01/2021 09:39:05
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.4
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-Date: 2020-12-31
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+Version: 2.7.5.1000
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+Date: 2021-1-22
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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version bump

Zuguang Gu authored on 31/12/2020 09:03:07
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.4.1000
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+Version: 2.7.4
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 Date: 2020-12-31
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

add save_last option

Zuguang Gu authored on 31/12/2020 09:02:28
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.3
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-Date: 2020-12-21
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+Version: 2.7.4.1000
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+Date: 2020-12-31
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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version bump

Zuguang Gu authored on 21/12/2020 16:37:32
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.3
5 5 
 Date: 2020-12-21
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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move heatmap() as a private function

Zuguang Gu authored on 21/12/2020 16:03:30
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DESCRIPTION
History View file @ 46b5212b
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
3 3 
 Title: Make Complex Heatmaps
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-Version: 2.7.2
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-Date: 2020-12-18
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+Version: 2.7.2.1000
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+Date: 2020-12-21
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add post_fun to draw

Zuguang Gu authored on 18/12/2020 07:47:08
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DESCRIPTION
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1 1 
 Package: ComplexHeatmap
2 2 
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 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.2
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 Date: 2020-12-18
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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draw() also allows post_fun

Zuguang Gu authored on 18/12/2020 07:17:49
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DESCRIPTION
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.2
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-Date: 2020-12-17
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+Version: 2.7.2.1000
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+Date: 2020-12-18
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 17/12/2020 21:04:55
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History View file @ 4e17ec69
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.2
5 5 
 Date: 2020-12-17
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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versio bump

Zuguang Gu authored on 17/12/2020 21:04:03
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History View file @ d101d578
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1016
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+Version: 2.7.2.1000
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 Date: 2020-12-17
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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change cex to fontsize

Zuguang Gu authored on 17/12/2020 09:02:57
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DESCRIPTION
History View file @ 3406428c
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1015
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-Date: 2020-12-15
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+Version: 2.7.1.1016
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+Date: 2020-12-17
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add a mark for UpSet

Zuguang Gu authored on 15/12/2020 12:39:08
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1 1 
 Package: ComplexHeatmap
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1014
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+Version: 2.7.1.1015
5 5 
 Date: 2020-12-15
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

won't generate color matrix when type=='none'

Zuguang Gu authored on 15/12/2020 12:03:14
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DESCRIPTION
History View file @ e626fd77
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1013
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+Version: 2.7.1.1014
5 5 
 Date: 2020-12-15
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

won't generate color matrix when type=='none'

Zuguang Gu authored on 15/12/2020 12:01:39
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DESCRIPTION
History View file @ 110a6d65
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1012
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-Date: 2020-12-14
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+Version: 2.7.1.1013
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+Date: 2020-12-15
6 6 
 Author: Zuguang Gu
7 7 
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8 
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

move code for interactive heatmap to InteractiveComplexHeatmap package

Zuguang Gu authored on 14/12/2020 08:38:56
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DESCRIPTION
History View file @ 4c1a4a3f
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1 1 
 Package: ComplexHeatmap
2 2 
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1011
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-Date: 2020-12-13
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+Version: 2.7.1.1012
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+Date: 2020-12-14
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13 
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14 
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15 
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 
-    shiny, S4Vectors (>= 0.26.1), gridGraphics, gplots
16 
+    gridGraphics, gplots
17 17 
 VignetteBuilder: knitr
18 18 
 Description: Complex heatmaps are efficient to visualize associations
19 19 
     between different sources of data sets and reveal potential patterns.
Browse code

translate stats::heatmap() and gplots::heatmap.2()

Zuguang Gu authored on 13/12/2020 20:54:51
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DESCRIPTION
History View file @ 2f644204
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1 1 
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1010
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-Date: 2020-12-8
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+Version: 2.7.1.1011
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+Date: 2020-12-13
6 6 
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
... ... 
@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
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     jpeg, tiff, fastcluster, EnrichedHeatmap,
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     dendextend (>= 1.0.1), grImport, grImport2, glue,
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     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
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-    shiny, S4Vectors (>= 0.26.1)
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+    shiny, S4Vectors (>= 0.26.1), gridGraphics, gplots
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 VignetteBuilder: knitr
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 Description: Complex heatmaps are efficient to visualize associations
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     between different sources of data sets and reveal potential patterns.
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@@ -21,4 +21,4 @@ Description: Complex heatmaps are efficient to visualize associations
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     multiple heatmaps and supports various annotation graphics.
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 biocViews: Software, Visualization, Sequencing
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 URL: https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
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-License: MIT + file LICENSE
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\ No newline at end of file
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+License: MIT + file LICENSE
Browse code

selectPosition()/selectArea() works well on Rstudio desktop

Zuguang Gu authored on 08/12/2020 20:47:42
Showing 1 changed files
DESCRIPTION
History View file @ d6bbf330
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@@ -1,8 +1,8 @@
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1009
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-Date: 2020-12-1
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+Version: 2.7.1.1010
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+Date: 2020-12-8
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

pheatmap(): change heatmap name to ' ' to turn off legend title by default

Zuguang Gu authored on 01/12/2020 16:03:08
Showing 1 changed files
DESCRIPTION
History View file @ 65b15833
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@@ -1,8 +1,8 @@
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1008
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-Date: 2020-11-27
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+Version: 2.7.1.1009
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+Date: 2020-12-1
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

col can be set as NULL in Heatmap()

Zuguang Gu authored on 27/11/2020 09:57:23
Showing 1 changed files
DESCRIPTION
History View file @ a387b860
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@@ -1,8 +1,8 @@
1 1 
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1007
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-Date: 2020-11-25
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+Version: 2.7.1.1008
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+Date: 2020-11-27
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

consider when dimnames() is NULL

Zuguang Gu authored on 25/11/2020 19:39:32
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DESCRIPTION
History View file @ 5938bf0d
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@@ -1,7 +1,7 @@
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1006
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+Version: 2.7.1.1007
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 Date: 2020-11-25
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

move S4vector to suggests

Zuguang Gu authored on 25/11/2020 14:04:09
Showing 1 changed files
DESCRIPTION
History View file @ 8963bccb
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@@ -1,19 +1,19 @@
1 1 
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1005
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-Date: 2020-11-24
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+Version: 2.7.1.1006
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+Date: 2020-11-25
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
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     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
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-    Cairo, digest, S4Vectors (>= 0.26.1), IRanges, matrixStats
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+    Cairo, digest, IRanges, matrixStats
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 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
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     jpeg, tiff, fastcluster, EnrichedHeatmap,
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     dendextend (>= 1.0.1), grImport, grImport2, glue,