Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
Showing1 changed files
1 1
deleted file mode 100644
... ...
@@ -1,27 +0,0 @@
1
-\name{show-SingleAnnotation-method}
2
-\alias{show,SingleAnnotation-method}
3
-\title{
4
-Print the SingleAnnotation object
5
-}
6
-\description{
7
-Print the SingleAnnotation object
8
-}
9
-\usage{
10
-\S4method{show}{SingleAnnotation}(object)
11
-}
12
-\arguments{
13
-
14
-  \item{object}{A \code{\link{SingleAnnotation-class}} object.}
15
-
16
-}
17
-\value{
18
-No value is returned.
19
-}
20
-\author{
21
-Zuguang Gu <z.gu@dkfz.de>
22
-}
23
-\examples{
24
-# There is no example
25
-NULL
26
-
27
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
Showing1 changed files
... ...
@@ -23,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
+
26 27
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
... ...
@@ -23,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
+
26 27
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
... ...
@@ -23,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
+
26 27
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
... ...
@@ -23,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
+
26 27
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
... ...
@@ -23,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
+
26 27
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
1 1
old mode 100755
2 2
new mode 100644
... ...
@@ -11,7 +11,7 @@ Print the SingleAnnotation object
11 11
 }
12 12
 \arguments{
13 13
 
14
-  \item{object}{a \code{\link{SingleAnnotation-class}} object.}
14
+  \item{object}{A \code{\link{SingleAnnotation-class}} object.}
15 15
 
16 16
 }
17 17
 \value{
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
1 1
old mode 100644
2 2
new mode 100755
Browse code

resolve conflict from master branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108131 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 03/09/2015 20:32:44
Showing1 changed files
... ...
@@ -20,3 +20,8 @@ No value is returned.
20 20
 \author{
21 21
 Zuguang Gu <z.gu@dkfz.de>
22 22
 }
23
+\examples{
24
+# There is no example
25
+NULL
26
+
27
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
... ...
@@ -7,10 +7,12 @@ Print the SingleAnnotation object
7 7
 Print the SingleAnnotation object
8 8
 }
9 9
 \usage{
10
-\S4method{show}{SingleAnnotation}(object)}
10
+\S4method{show}{SingleAnnotation}(object)
11
+}
11 12
 \arguments{
12 13
 
13 14
   \item{object}{a \code{\link{SingleAnnotation-class}} object.}
15
+
14 16
 }
15 17
 \value{
16 18
 No value is returned.
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
... ...
@@ -2,11 +2,9 @@
2 2
 \alias{show,SingleAnnotation-method}
3 3
 \title{
4 4
 Print the SingleAnnotation object
5
-
6 5
 }
7 6
 \description{
8 7
 Print the SingleAnnotation object
9
-
10 8
 }
11 9
 \usage{
12 10
 \S4method{show}{SingleAnnotation}(object)}
... ...
@@ -16,9 +14,7 @@ Print the SingleAnnotation object
16 14
 }
17 15
 \value{
18 16
 No value is returned.
19
-
20 17
 }
21 18
 \author{
22 19
 Zuguang Gu <z.gu@dkfz.de>
23
-
24 20
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
Showing1 changed files
... ...
@@ -1,30 +1,24 @@
1 1
 \name{show-SingleAnnotation-method}
2 2
 \alias{show,SingleAnnotation-method}
3 3
 \title{
4
-Print the SingleAnnotation object  
5
-
4
+Print the SingleAnnotation object
6 5
 
7 6
 }
8 7
 \description{
9
-Print the SingleAnnotation object  
10
-
8
+Print the SingleAnnotation object
11 9
 
12 10
 }
13 11
 \usage{
14
-\S4method{show}{SingleAnnotation}(object)
15
-}
12
+\S4method{show}{SingleAnnotation}(object)}
16 13
 \arguments{
17 14
 
18 15
   \item{object}{a \code{\link{SingleAnnotation-class}} object.}
19
-
20 16
 }
21 17
 \value{
22
-No value is returned.  
23
-
18
+No value is returned.
24 19
 
25 20
 }
26 21
 \author{
27
-Zuguang Gu <z.gu@dkfz.de>  
28
-
22
+Zuguang Gu <z.gu@dkfz.de>
29 23
 
30 24
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
... ...
@@ -1,24 +1,30 @@
1 1
 \name{show-SingleAnnotation-method}
2 2
 \alias{show,SingleAnnotation-method}
3 3
 \title{
4
-Print the SingleAnnotation object
4
+Print the SingleAnnotation object  
5
+
5 6
 
6 7
 }
7 8
 \description{
8
-Print the SingleAnnotation object
9
+Print the SingleAnnotation object  
10
+
9 11
 
10 12
 }
11 13
 \usage{
12
-\S4method{show}{SingleAnnotation}(object)}
14
+\S4method{show}{SingleAnnotation}(object)
15
+}
13 16
 \arguments{
14 17
 
15 18
   \item{object}{a \code{\link{SingleAnnotation-class}} object.}
19
+
16 20
 }
17 21
 \value{
18
-No value is returned.
22
+No value is returned.  
23
+
19 24
 
20 25
 }
21 26
 \author{
22
-Zuguang Gu <z.gu@dkfz.de>
27
+Zuguang Gu <z.gu@dkfz.de>  
28
+
23 29
 
24 30
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
... ...
@@ -1,30 +1,24 @@
1 1
 \name{show-SingleAnnotation-method}
2 2
 \alias{show,SingleAnnotation-method}
3 3
 \title{
4
-Print the SingleAnnotation object  
5
-
4
+Print the SingleAnnotation object
6 5
 
7 6
 }
8 7
 \description{
9
-Print the SingleAnnotation object  
10
-
8
+Print the SingleAnnotation object
11 9
 
12 10
 }
13 11
 \usage{
14
-\S4method{show}{SingleAnnotation}(object)
15
-}
12
+\S4method{show}{SingleAnnotation}(object)}
16 13
 \arguments{
17 14
 
18 15
   \item{object}{a \code{\link{SingleAnnotation-class}} object.}
19
-
20 16
 }
21 17
 \value{
22
-No value is returned.  
23
-
18
+No value is returned.
24 19
 
25 20
 }
26 21
 \author{
27
-Zuguang Gu <z.gu@dkfz.de>  
28
-
22
+Zuguang Gu <z.gu@dkfz.de>
29 23
 
30 24
 }
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
Showing1 changed files
1 1
new file mode 100644
... ...
@@ -0,0 +1,30 @@
1
+\name{show-SingleAnnotation-method}
2
+\alias{show,SingleAnnotation-method}
3
+\title{
4
+Print the SingleAnnotation object  
5
+
6
+
7
+}
8
+\description{
9
+Print the SingleAnnotation object  
10
+
11
+
12
+}
13
+\usage{
14
+\S4method{show}{SingleAnnotation}(object)
15
+}
16
+\arguments{
17
+
18
+  \item{object}{a \code{\link{SingleAnnotation-class}} object.}
19
+
20
+}
21
+\value{
22
+No value is returned.  
23
+
24
+
25
+}
26
+\author{
27
+Zuguang Gu <z.gu@dkfz.de>  
28
+
29
+
30
+}