Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
Showing1 changed files
1 1
deleted file mode 100644
... ...
@@ -1,40 +0,0 @@
1
-\name{draw_heatmap_legend-HeatmapList-method}
2
-\alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4
-\title{
5
-Draw legends for All Heatmaps
6
-}
7
-\description{
8
-Draw legends for All Heatmaps
9
-}
10
-\usage{
11
-\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12
-}
13
-\arguments{
14
-
15
-  \item{object}{A \code{\link{HeatmapList-class}} object.}
16
-  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid:grid.grob]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17
-  \item{...}{Other arguments.}
18
-
19
-}
20
-\details{
21
-Actually we call the "heatmap legends" as the main legends.
22
-For horizontal heatmap list, the legends are those from heamtap/row annotation/left/right annotation.
23
-For vertical heatmap list, the legends are those from heamtap/column annotation/top/bottom annotation.
24
-if \code{merge_legends} is true in \code{\link{draw,HeatmapList-method}}, then it contains all legends shown on the plot.
25
-
26
-A viewport is created which contains heatmap legends.
27
-
28
-This function is only for internal use.
29
-}
30
-\value{
31
-This function returns no value.
32
-}
33
-\author{
34
-Zuguang Gu <z.gu@dkfz.de>
35
-}
36
-\examples{
37
-# There is no example
38
-NULL
39
-
40
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
3 4
 \title{
4 5
 Draw legends for All Heatmaps
5 6
 }
... ...
@@ -32,8 +33,8 @@ This function returns no value.
32 33
 \author{
33 34
 Zuguang Gu <z.gu@dkfz.de>
34 35
 }
35
-\alias{draw_heatmap_legend}
36 36
 \examples{
37 37
 # There is no example
38 38
 NULL
39
+
39 40
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4 3
 \title{
5 4
 Draw legends for All Heatmaps
6 5
 }
... ...
@@ -33,8 +32,8 @@ This function returns no value.
33 32
 \author{
34 33
 Zuguang Gu <z.gu@dkfz.de>
35 34
 }
35
+\alias{draw_heatmap_legend}
36 36
 \examples{
37 37
 # There is no example
38 38
 NULL
39
-
40 39
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
3 4
 \title{
4 5
 Draw legends for All Heatmaps
5 6
 }
... ...
@@ -32,8 +33,8 @@ This function returns no value.
32 33
 \author{
33 34
 Zuguang Gu <z.gu@dkfz.de>
34 35
 }
35
-\alias{draw_heatmap_legend}
36 36
 \examples{
37 37
 # There is no example
38 38
 NULL
39
+
39 40
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4 3
 \title{
5 4
 Draw legends for All Heatmaps
6 5
 }
... ...
@@ -33,8 +32,8 @@ This function returns no value.
33 32
 \author{
34 33
 Zuguang Gu <z.gu@dkfz.de>
35 34
 }
35
+\alias{draw_heatmap_legend}
36 36
 \examples{
37 37
 # There is no example
38 38
 NULL
39
-
40 39
 }
Browse code

fix warnings in Rd files

Zuguang Gu authored on 28/11/2018 09:32:19
Showing1 changed files
... ...
@@ -13,7 +13,7 @@ Draw legends for All Heatmaps
13 13
 \arguments{
14 14
 
15 15
   \item{object}{A \code{\link{HeatmapList-class}} object.}
16
-  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
16
+  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid:grid.grob]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17 17
   \item{...}{Other arguments.}
18 18
 
19 19
 }
Browse code

documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
Showing1 changed files
... ...
@@ -2,22 +2,27 @@
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3
 \alias{draw_heatmap_legend}
4 4
 \title{
5
-Draw legends for all heatmaps
5
+Draw legends for All Heatmaps
6 6
 }
7 7
 \description{
8
-Draw legends for all heatmaps
8
+Draw legends for All Heatmaps
9 9
 }
10 10
 \usage{
11 11
 \S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12 12
 }
13 13
 \arguments{
14 14
 
15
-  \item{object}{a \code{\link{HeatmapList-class}} object}
16
-  \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
17
-  \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
15
+  \item{object}{A \code{\link{HeatmapList-class}} object.}
16
+  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17
+  \item{...}{Other arguments.}
18 18
 
19 19
 }
20 20
 \details{
21
+Actually we call the "heatmap legends" as the main legends.
22
+For horizontal heatmap list, the legends are those from heamtap/row annotation/left/right annotation.
23
+For vertical heatmap list, the legends are those from heamtap/column annotation/top/bottom annotation.
24
+if \code{merge_legends} is true in \code{\link{draw,HeatmapList-method}}, then it contains all legends shown on the plot.
25
+
21 26
 A viewport is created which contains heatmap legends.
22 27
 
23 28
 This function is only for internal use.
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
3 4
 \title{
4 5
 Draw legends for all heatmaps
5 6
 }
... ...
@@ -27,8 +28,8 @@ This function returns no value.
27 28
 \author{
28 29
 Zuguang Gu <z.gu@dkfz.de>
29 30
 }
30
-\alias{draw_heatmap_legend}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
+
34 35
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4 3
 \title{
5 4
 Draw legends for all heatmaps
6 5
 }
... ...
@@ -28,8 +27,8 @@ This function returns no value.
28 27
 \author{
29 28
 Zuguang Gu <z.gu@dkfz.de>
30 29
 }
30
+\alias{draw_heatmap_legend}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
-
35 34
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
3 4
 \title{
4 5
 Draw legends for all heatmaps
5 6
 }
... ...
@@ -27,8 +28,8 @@ This function returns no value.
27 28
 \author{
28 29
 Zuguang Gu <z.gu@dkfz.de>
29 30
 }
30
-\alias{draw_heatmap_legend}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
+
34 35
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4 3
 \title{
5 4
 Draw legends for all heatmaps
6 5
 }
... ...
@@ -28,8 +27,8 @@ This function returns no value.
28 27
 \author{
29 28
 Zuguang Gu <z.gu@dkfz.de>
30 29
 }
30
+\alias{draw_heatmap_legend}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
-
35 34
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
3 4
 \title{
4 5
 Draw legends for all heatmaps
5 6
 }
... ...
@@ -27,8 +28,8 @@ This function returns no value.
27 28
 \author{
28 29
 Zuguang Gu <z.gu@dkfz.de>
29 30
 }
30
-\alias{draw_heatmap_legend}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
+
34 35
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
1 1
old mode 100755
2 2
new mode 100644
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_legend-HeatmapList-method}
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3
-\alias{draw_heatmap_legend}
4 3
 \title{
5 4
 Draw legends for all heatmaps
6 5
 }
... ...
@@ -28,8 +27,8 @@ This function returns no value.
28 27
 \author{
29 28
 Zuguang Gu <z.gu@dkfz.de>
30 29
 }
30
+\alias{draw_heatmap_legend}
31 31
 \examples{
32
-# no example for this internal method
32
+# There is no example
33 33
 NULL
34
-
35 34
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
1 1
old mode 100644
2 2
new mode 100755
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: db263179df8a28bd25eb5afcf64aa9c37b2fdd32

refresh docs



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107358 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:49:59
Showing1 changed files
... ...
@@ -19,6 +19,7 @@ Draw legends for all heatmaps
19 19
 }
20 20
 \details{
21 21
 A viewport is created which contains heatmap legends.
22
+
22 23
 This function is only for internal use.
23 24
 }
24 25
 \value{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
... ...
@@ -8,12 +8,14 @@ Draw legends for all heatmaps
8 8
 Draw legends for all heatmaps
9 9
 }
10 10
 \usage{
11
-\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
11
+\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12
+}
12 13
 \arguments{
13 14
 
14 15
   \item{object}{a \code{\link{HeatmapList-class}} object}
15 16
   \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
16 17
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
18
+
17 19
 }
18 20
 \details{
19 21
 A viewport is created which contains heatmap legends.
... ...
@@ -28,4 +30,5 @@ Zuguang Gu <z.gu@dkfz.de>
28 30
 \examples{
29 31
 # no example for this internal method
30 32
 NULL
33
+
31 34
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
... ...
@@ -3,11 +3,9 @@
3 3
 \alias{draw_heatmap_legend}
4 4
 \title{
5 5
 Draw legends for all heatmaps
6
-
7 6
 }
8 7
 \description{
9 8
 Draw legends for all heatmaps
10
-
11 9
 }
12 10
 \usage{
13 11
 \S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
... ...
@@ -19,30 +17,15 @@ Draw legends for all heatmaps
19 17
 }
20 18
 \details{
21 19
 A viewport is created which contains heatmap legends.
22
-
23 20
 This function is only for internal use.
24
-
25 21
 }
26 22
 \value{
27 23
 This function returns no value.
28
-
29 24
 }
30 25
 \author{
31 26
 Zuguang Gu <z.gu@dkfz.de>
32
-
33 27
 }
34 28
 \examples{
35
-
36
-
37
-
38
-
39
-
40
-
41
-
42
-
43
-
44
-
45
-
46
-
47 29
 # no example for this internal method
48
-NULL}
30
+NULL
31
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
Showing1 changed files
... ...
@@ -39,5 +39,10 @@ Zuguang Gu <z.gu@dkfz.de>
39 39
 
40 40
 
41 41
 
42
+
43
+
44
+
45
+
46
+
42 47
 # no example for this internal method
43 48
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
Showing1 changed files
... ...
@@ -38,5 +38,6 @@ Zuguang Gu <z.gu@dkfz.de>
38 38
 
39 39
 
40 40
 
41
+
41 42
 # no example for this internal method
42 43
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
Showing1 changed files
... ...
@@ -34,5 +34,9 @@ Zuguang Gu <z.gu@dkfz.de>
34 34
 \examples{
35 35
 
36 36
 
37
+
38
+
39
+
40
+
37 41
 # no example for this internal method
38 42
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
Showing1 changed files
... ...
@@ -32,5 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 
33 33
 }
34 34
 \examples{
35
+
36
+
35 37
 # no example for this internal method
36 38
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
Showing1 changed files
... ...
@@ -32,6 +32,5 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 
33 33
 }
34 34
 \examples{
35
-
36 35
 # no example for this internal method
37 36
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
Showing1 changed files
... ...
@@ -32,5 +32,6 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 
33 33
 }
34 34
 \examples{
35
+
35 36
 # no example for this internal method
36 37
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
Showing1 changed files
... ...
@@ -32,7 +32,5 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 
33 33
 }
34 34
 \examples{
35
-
36
-
37 35
 # no example for this internal method
38 36
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
Showing1 changed files
... ...
@@ -32,5 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 
33 33
 }
34 34
 \examples{
35
+
36
+
35 37
 # no example for this internal method
36 38
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2ac3bebe61bab24cb3205983ae59a3372d36aed3

color_mapping_legend returns grob object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106000 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/07/2015 20:12:14
Showing1 changed files
... ...
@@ -10,10 +10,11 @@ Draw legends for all heatmaps
10 10
 
11 11
 }
12 12
 \usage{
13
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
13
+\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
14 14
 \arguments{
15 15
 
16 16
   \item{object}{a \code{\link{HeatmapList-class}} object}
17
+  \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
17 18
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
18 19
 }
19 20
 \details{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
Showing1 changed files
... ...
@@ -31,9 +31,5 @@ Zuguang Gu <z.gu@dkfz.de>
31 31
 
32 32
 }
33 33
 \examples{
34
-
35
-
36 34
 # no example for this internal method
37
-NULL
38
-
39
-}
35
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
Showing1 changed files
... ...
@@ -32,6 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 }
33 33
 \examples{
34 34
 
35
+
35 36
 # no example for this internal method
36 37
 NULL
37 38
 
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
Showing1 changed files
... ...
@@ -31,5 +31,8 @@ Zuguang Gu <z.gu@dkfz.de>
31 31
 
32 32
 }
33 33
 \examples{
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+
34 35
 # no example for this internal method
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-NULL}
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+NULL
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+
38
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
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... ...
@@ -2,42 +2,34 @@
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3
 \alias{draw_heatmap_legend}
4 4
 \title{
5
-Draw legends for all heatmaps  
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-
5
+Draw legends for all heatmaps
7 6
 
8 7
 }
9 8
 \description{
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-Draw legends for all heatmaps  
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-
9
+Draw legends for all heatmaps
12 10
 
13 11
 }
14 12
 \usage{
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-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
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-}
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+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
17 14
 \arguments{
18 15
 
19 16
   \item{object}{a \code{\link{HeatmapList-class}} object}
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   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
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-
22 18
 }
23 19
 \details{
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-A viewport is created which contains heatmap legends.  
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-
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-This function is only for internal use.  
20
+A viewport is created which contains heatmap legends.
27 21
 
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+This function is only for internal use.
28 23
 
29 24
 }
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 \value{
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-This function returns no value.  
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-
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+This function returns no value.
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34 28
 }
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 \author{
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-Zuguang Gu <z.gu@dkfz.de>  
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-
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+Zuguang Gu <z.gu@dkfz.de>
38 31
 
39 32
 }
40 33
 \examples{
41 34
 # no example for this internal method
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-NULL
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-}
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+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
... ...
@@ -2,34 +2,42 @@
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3
 \alias{draw_heatmap_legend}
4 4
 \title{
5
-Draw legends for all heatmaps
5
+Draw legends for all heatmaps  
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+
6 7
 
7 8
 }
8 9
 \description{
9
-Draw legends for all heatmaps
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+Draw legends for all heatmaps  
11
+
10 12
 
11 13
 }
12 14
 \usage{
13
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
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+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
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+}
14 17
 \arguments{
15 18
 
16 19
   \item{object}{a \code{\link{HeatmapList-class}} object}
17 20
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
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+
18 22
 }
19 23
 \details{
20
-A viewport is created which contains heatmap legends.
24
+A viewport is created which contains heatmap legends.  
25
+
26
+This function is only for internal use.  
21 27
 
22
-This function is only for internal use.
23 28
 
24 29
 }
25 30
 \value{
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-This function returns no value.
31
+This function returns no value.  
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+
27 33
 
28 34
 }
29 35
 \author{
30
-Zuguang Gu <z.gu@dkfz.de>
36
+Zuguang Gu <z.gu@dkfz.de>  
37
+
31 38
 
32 39
 }
33 40
 \examples{
34 41
 # no example for this internal method
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-NULL}
42
+NULL
43
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
... ...
@@ -2,42 +2,34 @@
2 2
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3
 \alias{draw_heatmap_legend}
4 4
 \title{
5
-Draw legends for all heatmaps  
6
-
5
+Draw legends for all heatmaps
7 6
 
8 7
 }
9 8
 \description{
10
-Draw legends for all heatmaps  
11
-
9
+Draw legends for all heatmaps
12 10
 
13 11
 }
14 12
 \usage{
15
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16
-}
13
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
17 14
 \arguments{
18 15
 
19 16
   \item{object}{a \code{\link{HeatmapList-class}} object}
20 17
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21
-
22 18
 }
23 19
 \details{
24
-A viewport is created which contains heatmap legends.  
25
-
26
-This function is only for internal use.  
20
+A viewport is created which contains heatmap legends.
27 21
 
22
+This function is only for internal use.
28 23
 
29 24
 }
30 25
 \value{
31
-This function returns no value.  
32
-
26
+This function returns no value.
33 27
 
34 28
 }
35 29
 \author{
36
-Zuguang Gu <z.gu@dkfz.de>  
37
-
30
+Zuguang Gu <z.gu@dkfz.de>
38 31
 
39 32
 }
40 33
 \examples{
41 34
 # no example for this internal method
42
-NULL
43
-}
35
+NULL}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
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1 1
new file mode 100644
... ...
@@ -0,0 +1,43 @@
1
+\name{draw_heatmap_legend-HeatmapList-method}
2
+\alias{draw_heatmap_legend,HeatmapList-method}
3
+\alias{draw_heatmap_legend}
4
+\title{
5
+Draw legends for all heatmaps  
6
+
7
+
8
+}
9
+\description{
10
+Draw legends for all heatmaps  
11
+
12
+
13
+}
14
+\usage{
15
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16
+}
17
+\arguments{
18
+
19
+  \item{object}{a \code{\link{HeatmapList-class}} object}
20
+  \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21
+
22
+}
23
+\details{
24
+A viewport is created which contains heatmap legends.  
25
+
26
+This function is only for internal use.  
27
+
28
+
29
+}
30
+\value{
31
+This function returns no value.  
32
+
33
+
34
+}
35
+\author{
36
+Zuguang Gu <z.gu@dkfz.de>  
37
+
38
+
39
+}
40
+\examples{
41
+# no example for this internal method
42
+NULL
43
+}