1. ComplexHeatmap
  2. man
  3. draw_heatmap_legend-HeatmapList-method.rd
Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @1cb7fea
1 1 
deleted file mode 100644
... ... 
@@ -1,40 +0,0 @@
1 
-\name{draw_heatmap_legend-HeatmapList-method}
2 
-\alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 
-\title{
5 
-Draw legends for All Heatmaps
6 
-}
7 
-\description{
8 
-Draw legends for All Heatmaps
9 
-}
10 
-\usage{
11 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12 
-}
13 
-\arguments{
14 
-
15 
-  \item{object}{A \code{\link{HeatmapList-class}} object.}
16 
-  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid:grid.grob]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17 
-  \item{...}{Other arguments.}
18 
-
19 
-}
20 
-\details{
21 
-Actually we call the "heatmap legends" as the main legends.
22 
-For horizontal heatmap list, the legends are those from heamtap/row annotation/left/right annotation.
23 
-For vertical heatmap list, the legends are those from heamtap/column annotation/top/bottom annotation.
24 
-if \code{merge_legends} is true in \code{\link{draw,HeatmapList-method}}, then it contains all legends shown on the plot.
25 
-
26 
-A viewport is created which contains heatmap legends.
27 
-
28 
-This function is only for internal use.
29 
-}
30 
-\value{
31 
-This function returns no value.
32 
-}
33 
-\author{
34 
-Zuguang Gu <z.gu@dkfz.de>
35 
-}
36 
-\examples{
37 
-# There is no example
38 
-NULL
39 
-
40 
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @9e95ee3
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
3 4 
 \title{
4 5 
 Draw legends for All Heatmaps
5 6 
 }
... ... 
@@ -32,8 +33,8 @@ This function returns no value.
32 33 
 \author{
33 34 
 Zuguang Gu <z.gu@dkfz.de>
34 35 
 }
35 
-\alias{draw_heatmap_legend}
36 36 
 \examples{
37 37 
 # There is no example
38 38 
 NULL
39 
+
39 40 
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @21aea96
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 3 
 \title{
5 4 
 Draw legends for All Heatmaps
6 5 
 }
... ... 
@@ -33,8 +32,8 @@ This function returns no value.
33 32 
 \author{
34 33 
 Zuguang Gu <z.gu@dkfz.de>
35 34 
 }
35 
+\alias{draw_heatmap_legend}
36 36 
 \examples{
37 37 
 # There is no example
38 38 
 NULL
39 
-
40 39 
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @69345c7
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
3 4 
 \title{
4 5 
 Draw legends for All Heatmaps
5 6 
 }
... ... 
@@ -32,8 +33,8 @@ This function returns no value.
32 33 
 \author{
33 34 
 Zuguang Gu <z.gu@dkfz.de>
34 35 
 }
35 
-\alias{draw_heatmap_legend}
36 36 
 \examples{
37 37 
 # There is no example
38 38 
 NULL
39 
+
39 40 
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @948414f
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 3 
 \title{
5 4 
 Draw legends for All Heatmaps
6 5 
 }
... ... 
@@ -33,8 +32,8 @@ This function returns no value.
33 32 
 \author{
34 33 
 Zuguang Gu <z.gu@dkfz.de>
35 34 
 }
35 
+\alias{draw_heatmap_legend}
36 36 
 \examples{
37 37 
 # There is no example
38 38 
 NULL
39 
-
40 39 
 }
Browse code

fix warnings in Rd files

Zuguang Gu authored on 28/11/2018 09:32:19
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @7ba2bb4
... ... 
@@ -13,7 +13,7 @@ Draw legends for All Heatmaps
13 13 
 \arguments{
14 14
15 15 
   \item{object}{A \code{\link{HeatmapList-class}} object.}
16 
-  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
16 
+  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid:grid.grob]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17 17 
   \item{...}{Other arguments.}
18 18
19 19 
 }
Browse code

documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @3c40a7c
... ... 
@@ -2,22 +2,27 @@
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3 
 \alias{draw_heatmap_legend}
4 4 
 \title{
5 
-Draw legends for all heatmaps
5 
+Draw legends for All Heatmaps
6 6 
 }
7 7 
 \description{
8 
-Draw legends for all heatmaps
8 
+Draw legends for All Heatmaps
9 9 
 }
10 10 
 \usage{
11 11 
 \S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12 12 
 }
13 13 
 \arguments{
14 14
15 
-  \item{object}{a \code{\link{HeatmapList-class}} object}
16 
-  \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
17 
-  \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
15 
+  \item{object}{A \code{\link{HeatmapList-class}} object.}
16 
+  \item{legend_list}{A list of self-defined legends, should be wrapped into \code{\link[grid]{grob}} objects. It is normally constructed by \code{\link{Legend}}.}
17 
+  \item{...}{Other arguments.}
18 18
19 19 
 }
20 20 
 \details{
21 
+Actually we call the "heatmap legends" as the main legends.
22 
+For horizontal heatmap list, the legends are those from heamtap/row annotation/left/right annotation.
23 
+For vertical heatmap list, the legends are those from heamtap/column annotation/top/bottom annotation.
24 
+if \code{merge_legends} is true in \code{\link{draw,HeatmapList-method}}, then it contains all legends shown on the plot.
25 
+
21 26 
 A viewport is created which contains heatmap legends.
22 27
23 28 
 This function is only for internal use.
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @864bd88
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
3 4 
 \title{
4 5 
 Draw legends for all heatmaps
5 6 
 }
... ... 
@@ -27,8 +28,8 @@ This function returns no value.
27 28 
 \author{
28 29 
 Zuguang Gu <z.gu@dkfz.de>
29 30 
 }
30 
-\alias{draw_heatmap_legend}
31 31 
 \examples{
32 32 
 # There is no example
33 33 
 NULL
34 
+
34 35 
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @d9834c5
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 3 
 \title{
5 4 
 Draw legends for all heatmaps
6 5 
 }
... ... 
@@ -28,8 +27,8 @@ This function returns no value.
28 27 
 \author{
29 28 
 Zuguang Gu <z.gu@dkfz.de>
30 29 
 }
30 
+\alias{draw_heatmap_legend}
31 31 
 \examples{
32 32 
 # There is no example
33 33 
 NULL
34 
-
35 34 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @b8dacfc
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
3 4 
 \title{
4 5 
 Draw legends for all heatmaps
5 6 
 }
... ... 
@@ -27,8 +28,8 @@ This function returns no value.
27 28 
 \author{
28 29 
 Zuguang Gu <z.gu@dkfz.de>
29 30 
 }
30 
-\alias{draw_heatmap_legend}
31 31 
 \examples{
32 32 
 # There is no example
33 33 
 NULL
34 
+
34 35 
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @1a56796
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 3 
 \title{
5 4 
 Draw legends for all heatmaps
6 5 
 }
... ... 
@@ -28,8 +27,8 @@ This function returns no value.
28 27 
 \author{
29 28 
 Zuguang Gu <z.gu@dkfz.de>
30 29 
 }
30 
+\alias{draw_heatmap_legend}
31 31 
 \examples{
32 32 
 # There is no example
33 33 
 NULL
34 
-
35 34 
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @249fdfa
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
3 4 
 \title{
4 5 
 Draw legends for all heatmaps
5 6 
 }
... ... 
@@ -27,8 +28,8 @@ This function returns no value.
27 28 
 \author{
28 29 
 Zuguang Gu <z.gu@dkfz.de>
29 30 
 }
30 
-\alias{draw_heatmap_legend}
31 31 
 \examples{
32 32 
 # There is no example
33 33 
 NULL
34 
+
34 35 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @ad35494
1 1 
old mode 100755
2 2 
new mode 100644
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_legend-HeatmapList-method}
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 
-\alias{draw_heatmap_legend}
4 3 
 \title{
5 4 
 Draw legends for all heatmaps
6 5 
 }
... ... 
@@ -28,8 +27,8 @@ This function returns no value.
28 27 
 \author{
29 28 
 Zuguang Gu <z.gu@dkfz.de>
30 29 
 }
30 
+\alias{draw_heatmap_legend}
31 31 
 \examples{
32 
-# no example for this internal method
32 
+# There is no example
33 33 
 NULL
34 
-
35 34 
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @8e55abf
1 1 
old mode 100644
2 2 
new mode 100755
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: db263179df8a28bd25eb5afcf64aa9c37b2fdd32

refresh docs



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107358 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:49:59
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @7ab3fd2
... ... 
@@ -19,6 +19,7 @@ Draw legends for all heatmaps
19 19 
 }
20 20 
 \details{
21 21 
 A viewport is created which contains heatmap legends.
22 
+
22 23 
 This function is only for internal use.
23 24 
 }
24 25 
 \value{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @ba8a507
... ... 
@@ -8,12 +8,14 @@ Draw legends for all heatmaps
8 8 
 Draw legends for all heatmaps
9 9 
 }
10 10 
 \usage{
11 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
11 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)
12 
+}
12 13 
 \arguments{
13 14
14 15 
   \item{object}{a \code{\link{HeatmapList-class}} object}
15 16 
   \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
16 17 
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
18 
+
17 19 
 }
18 20 
 \details{
19 21 
 A viewport is created which contains heatmap legends.
... ... 
@@ -28,4 +30,5 @@ Zuguang Gu <z.gu@dkfz.de>
28 30 
 \examples{
29 31 
 # no example for this internal method
30 32 
 NULL
33 
+
31 34 
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @f597719
... ... 
@@ -3,11 +3,9 @@
3 3 
 \alias{draw_heatmap_legend}
4 4 
 \title{
5 5 
 Draw legends for all heatmaps
6 
-
7 6 
 }
8 7 
 \description{
9 8 
 Draw legends for all heatmaps
10 
-
11 9 
 }
12 10 
 \usage{
13 11 
 \S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
... ... 
@@ -19,30 +17,15 @@ Draw legends for all heatmaps
19 17 
 }
20 18 
 \details{
21 19 
 A viewport is created which contains heatmap legends.
22 
-
23 20 
 This function is only for internal use.
24 
-
25 21 
 }
26 22 
 \value{
27 23 
 This function returns no value.
28 
-
29 24 
 }
30 25 
 \author{
31 26 
 Zuguang Gu <z.gu@dkfz.de>
32 
-
33 27 
 }
34 28 
 \examples{
35 
-
36 
-
37 
-
38 
-
39 
-
40 
-
41 
-
42 
-
43 
-
44 
-
45 
-
46 
-
47 29 
 # no example for this internal method
48 
-NULL}
30 
+NULL
31 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @5ab2cb8
... ... 
@@ -39,5 +39,10 @@ Zuguang Gu <z.gu@dkfz.de>
39 39
40 40
41 41
42 
+
43 
+
44 
+
45 
+
46 
+
42 47 
 # no example for this internal method
43 48 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @aee203e
... ... 
@@ -38,5 +38,6 @@ Zuguang Gu <z.gu@dkfz.de>
38 38
39 39
40 40
41 
+
41 42 
 # no example for this internal method
42 43 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @7f268ee
... ... 
@@ -34,5 +34,9 @@ Zuguang Gu <z.gu@dkfz.de>
34 34 
 \examples{
35 35
36 36
37 
+
38 
+
39 
+
40 
+
37 41 
 # no example for this internal method
38 42 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @dc0f5a9
... ... 
@@ -32,5 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
33 33 
 }
34 34 
 \examples{
35 
+
36 
+
35 37 
 # no example for this internal method
36 38 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @b08d7ba
... ... 
@@ -32,6 +32,5 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
33 33 
 }
34 34 
 \examples{
35 
-
36 35 
 # no example for this internal method
37 36 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @3bb5581
... ... 
@@ -32,5 +32,6 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
33 33 
 }
34 34 
 \examples{
35 
+
35 36 
 # no example for this internal method
36 37 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @0725063
... ... 
@@ -32,7 +32,5 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
33 33 
 }
34 34 
 \examples{
35 
-
36 
-
37 35 
 # no example for this internal method
38 36 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @2224e09
... ... 
@@ -32,5 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
33 33 
 }
34 34 
 \examples{
35 
+
36 
+
35 37 
 # no example for this internal method
36 38 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2ac3bebe61bab24cb3205983ae59a3372d36aed3

color_mapping_legend returns grob object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106000 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/07/2015 20:12:14
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @84036f2
... ... 
@@ -10,10 +10,11 @@ Draw legends for all heatmaps
10 10
11 11 
 }
12 12 
 \usage{
13 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
13 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, legend_list = list(), ...)}
14 14 
 \arguments{
15 15
16 16 
   \item{object}{a \code{\link{HeatmapList-class}} object}
17 
+  \item{legend_list}{a list of self-defined legend, should be wrapped into \code{\link[grid]{grob}} objects.}
17 18 
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
18 19 
 }
19 20 
 \details{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @07961c6
... ... 
@@ -31,9 +31,5 @@ Zuguang Gu <z.gu@dkfz.de>
31 31
32 32 
 }
33 33 
 \examples{
34 
-
35 
-
36 34 
 # no example for this internal method
37 
-NULL
38 
-
39 
-}
35 
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @10b246c
... ... 
@@ -32,6 +32,7 @@ Zuguang Gu <z.gu@dkfz.de>
32 32 
 }
33 33 
 \examples{
34 34
35 
+
35 36 
 # no example for this internal method
36 37 
 NULL
37 38
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @7f6dddf
... ... 
@@ -31,5 +31,8 @@ Zuguang Gu <z.gu@dkfz.de>
31 31
32 32 
 }
33 33 
 \examples{
34 
+
34 35 
 # no example for this internal method
35 
-NULL}
36 
+NULL
37 
+
38 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @6f1307c
... ... 
@@ -2,42 +2,34 @@
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3 
 \alias{draw_heatmap_legend}
4 4 
 \title{
5 
-Draw legends for all heatmaps
6 
-
5 
+Draw legends for all heatmaps
7 6
8 7 
 }
9 8 
 \description{
10 
-Draw legends for all heatmaps
11 
-
9 
+Draw legends for all heatmaps
12 10
13 11 
 }
14 12 
 \usage{
15 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16 
-}
13 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
17 14 
 \arguments{
18 15
19 16 
   \item{object}{a \code{\link{HeatmapList-class}} object}
20 17 
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21 
-
22 18 
 }
23 19 
 \details{
24 
-A viewport is created which contains heatmap legends.
25 
-
26 
-This function is only for internal use.
20 
+A viewport is created which contains heatmap legends.
27 21
22 
+This function is only for internal use.
28 23
29 24 
 }
30 25 
 \value{
31 
-This function returns no value.
32 
-
26 
+This function returns no value.
33 27
34 28 
 }
35 29 
 \author{
36 
-Zuguang Gu <z.gu@dkfz.de>
37 
-
30 
+Zuguang Gu <z.gu@dkfz.de>
38 31
39 32 
 }
40 33 
 \examples{
41 34 
 # no example for this internal method
42 
-NULL
43 
-}
35 
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @4818ea9
... ... 
@@ -2,34 +2,42 @@
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3 
 \alias{draw_heatmap_legend}
4 4 
 \title{
5 
-Draw legends for all heatmaps
5 
+Draw legends for all heatmaps
6 
+
6 7
7 8 
 }
8 9 
 \description{
9 
-Draw legends for all heatmaps
10 
+Draw legends for all heatmaps
11 
+
10 12
11 13 
 }
12 14 
 \usage{
13 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
15 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16 
+}
14 17 
 \arguments{
15 18
16 19 
   \item{object}{a \code{\link{HeatmapList-class}} object}
17 20 
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21 
+
18 22 
 }
19 23 
 \details{
20 
-A viewport is created which contains heatmap legends.
24 
+A viewport is created which contains heatmap legends.
25 
+
26 
+This function is only for internal use.
21 27
22 
-This function is only for internal use.
23 28
24 29 
 }
25 30 
 \value{
26 
-This function returns no value.
31 
+This function returns no value.
32 
+
27 33
28 34 
 }
29 35 
 \author{
30 
-Zuguang Gu <z.gu@dkfz.de>
36 
+Zuguang Gu <z.gu@dkfz.de>
37 
+
31 38
32 39 
 }
33 40 
 \examples{
34 41 
 # no example for this internal method
35 
-NULL}
42 
+NULL
43 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @f0eb7a9
... ... 
@@ -2,42 +2,34 @@
2 2 
 \alias{draw_heatmap_legend,HeatmapList-method}
3 3 
 \alias{draw_heatmap_legend}
4 4 
 \title{
5 
-Draw legends for all heatmaps
6 
-
5 
+Draw legends for all heatmaps
7 6
8 7 
 }
9 8 
 \description{
10 
-Draw legends for all heatmaps
11 
-
9 
+Draw legends for all heatmaps
12 10
13 11 
 }
14 12 
 \usage{
15 
-\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16 
-}
13 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)}
17 14 
 \arguments{
18 15
19 16 
   \item{object}{a \code{\link{HeatmapList-class}} object}
20 17 
   \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21 
-
22 18 
 }
23 19 
 \details{
24 
-A viewport is created which contains heatmap legends.
25 
-
26 
-This function is only for internal use.
20 
+A viewport is created which contains heatmap legends.
27 21
22 
+This function is only for internal use.
28 23
29 24 
 }
30 25 
 \value{
31 
-This function returns no value.
32 
-
26 
+This function returns no value.
33 27
34 28 
 }
35 29 
 \author{
36 
-Zuguang Gu <z.gu@dkfz.de>
37 
-
30 
+Zuguang Gu <z.gu@dkfz.de>
38 31
39 32 
 }
40 33 
 \examples{
41 34 
 # no example for this internal method
42 
-NULL
43 
-}
35 
+NULL}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
Showing1 changed files
man/draw_heatmap_legend-HeatmapList-method.rd
History View file @d1da987
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,43 @@
1 
+\name{draw_heatmap_legend-HeatmapList-method}
2 
+\alias{draw_heatmap_legend,HeatmapList-method}
3 
+\alias{draw_heatmap_legend}
4 
+\title{
5 
+Draw legends for all heatmaps
6 
+
7 
+
8 
+}
9 
+\description{
10 
+Draw legends for all heatmaps
11 
+
12 
+
13 
+}
14 
+\usage{
15 
+\S4method{draw_heatmap_legend}{HeatmapList}(object, ...)
16 
+}
17 
+\arguments{
18 
+
19 
+  \item{object}{a \code{\link{HeatmapList-class}} object}
20 
+  \item{...}{graphic parameters passed to \code{\link{color_mapping_legend,ColorMapping-method}}.}
21 
+
22 
+}
23 
+\details{
24 
+A viewport is created which contains heatmap legends.
25 
+
26 
+This function is only for internal use.
27 
+
28 
+
29 
+}
30 
+\value{
31 
+This function returns no value.
32 
+
33 
+
34 
+}
35 
+\author{
36 
+Zuguang Gu <z.gu@dkfz.de>
37 
+
38 
+
39 
+}
40 
+\examples{
41 
+# no example for this internal method
42 
+NULL
43 
+}