Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
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1 1
deleted file mode 100644
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@@ -1,36 +0,0 @@
1
-\name{draw_heatmap_body-Heatmap-method}
2
-\alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
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-\title{
5
-Draw Heatmap Body
6
-}
7
-\description{
8
-Draw Heatmap Body
9
-}
10
-\usage{
11
-\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
12
-}
13
-\arguments{
14
-
15
-  \item{object}{A \code{\link{Heatmap-class}} object.}
16
-  \item{kr}{Row slice index.}
17
-  \item{kc}{Column slice index.}
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-  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.}
19
-
20
-}
21
-\details{
22
-A viewport is created which contains subset rows and columns of the heatmap.
23
-
24
-This function is only for internal use.
25
-}
26
-\value{
27
-This function returns no value.
28
-}
29
-\author{
30
-Zuguang Gu <z.gu@dkfz.de>
31
-}
32
-\examples{
33
-# There is no example
34
-NULL
35
-
36
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
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@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
3 4
 \title{
4 5
 Draw Heatmap Body
5 6
 }
... ...
@@ -28,8 +29,8 @@ This function returns no value.
28 29
 \author{
29 30
 Zuguang Gu <z.gu@dkfz.de>
30 31
 }
31
-\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
+
35 36
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
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@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
4 3
 \title{
5 4
 Draw Heatmap Body
6 5
 }
... ...
@@ -29,8 +28,8 @@ This function returns no value.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
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@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
3 4
 \title{
4 5
 Draw Heatmap Body
5 6
 }
... ...
@@ -28,8 +29,8 @@ This function returns no value.
28 29
 \author{
29 30
 Zuguang Gu <z.gu@dkfz.de>
30 31
 }
31
-\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
+
35 36
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
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@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
4 3
 \title{
5 4
 Draw Heatmap Body
6 5
 }
... ...
@@ -29,8 +28,8 @@ This function returns no value.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
Browse code

documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
Showing1 changed files
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@@ -2,10 +2,10 @@
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3 3
 \alias{draw_heatmap_body}
4 4
 \title{
5
-Draw the Heatmap Body
5
+Draw Heatmap Body
6 6
 }
7 7
 \description{
8
-Draw the Heatmap Body
8
+Draw Heatmap Body
9 9
 }
10 10
 \usage{
11 11
 \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
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@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
3 4
 \title{
4 5
 Draw the Heatmap Body
5 6
 }
... ...
@@ -28,8 +29,8 @@ This function returns no value.
28 29
 \author{
29 30
 Zuguang Gu <z.gu@dkfz.de>
30 31
 }
31
-\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
+
35 36
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
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@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
4 3
 \title{
5 4
 Draw the Heatmap Body
6 5
 }
... ...
@@ -29,8 +28,8 @@ This function returns no value.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
3 4
 \title{
4 5
 Draw the Heatmap Body
5 6
 }
... ...
@@ -28,8 +29,8 @@ This function returns no value.
28 29
 \author{
29 30
 Zuguang Gu <z.gu@dkfz.de>
30 31
 }
31
-\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
+
35 36
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
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@@ -1,11 +1,10 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
4 3
 \title{
5
-Draw the heatmap body
4
+Draw the Heatmap Body
6 5
 }
7 6
 \description{
8
-Draw the heatmap body
7
+Draw the Heatmap Body
9 8
 }
10 9
 \usage{
11 10
 \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
... ...
@@ -15,7 +14,7 @@ Draw the heatmap body
15 14
   \item{object}{A \code{\link{Heatmap-class}} object.}
16 15
   \item{kr}{Row slice index.}
17 16
   \item{kc}{Column slice index.}
18
-  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.}
17
+  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.}
19 18
 
20 19
 }
21 20
 \details{
... ...
@@ -29,8 +28,8 @@ This function returns no value.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
... ...
@@ -1,5 +1,6 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
3 4
 \title{
4 5
 Draw the heatmap body
5 6
 }
... ...
@@ -28,8 +29,8 @@ This function returns no value.
28 29
 \author{
29 30
 Zuguang Gu <z.gu@dkfz.de>
30 31
 }
31
-\alias{draw_heatmap_body}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
+
35 36
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
1 1
old mode 100755
2 2
new mode 100644
... ...
@@ -1,6 +1,5 @@
1 1
 \name{draw_heatmap_body-Heatmap-method}
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3
-\alias{draw_heatmap_body}
4 3
 \title{
5 4
 Draw the heatmap body
6 5
 }
... ...
@@ -8,21 +7,18 @@ Draw the heatmap body
8 7
 Draw the heatmap body
9 8
 }
10 9
 \usage{
11
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
10
+\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
12 11
 }
13 12
 \arguments{
14 13
 
15
-  \item{object}{a \code{\link{Heatmap-class}} object.}
16
-  \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
17
-  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
14
+  \item{object}{A \code{\link{Heatmap-class}} object.}
15
+  \item{kr}{Row slice index.}
16
+  \item{kc}{Column slice index.}
17
+  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.}
18 18
 
19 19
 }
20 20
 \details{
21
-The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22
-specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23
-there will be gaps between rows to identify different row-slice.
24
-
25
-A viewport is created which contains subset rows of the heatmap.
21
+A viewport is created which contains subset rows and columns of the heatmap.
26 22
 
27 23
 This function is only for internal use.
28 24
 }
... ...
@@ -32,8 +28,8 @@ This function returns no value.
32 28
 \author{
33 29
 Zuguang Gu <z.gu@dkfz.de>
34 30
 }
31
+\alias{draw_heatmap_body}
35 32
 \examples{
36
-# no example for this internal method
33
+# There is no example
37 34
 NULL
38
-
39 35
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
1 1
old mode 100644
2 2
new mode 100755
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: db263179df8a28bd25eb5afcf64aa9c37b2fdd32

refresh docs



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107358 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:49:59
Showing1 changed files
... ...
@@ -21,7 +21,9 @@ Draw the heatmap body
21 21
 The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22 22
 specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23 23
 there will be gaps between rows to identify different row-slice.
24
+
24 25
 A viewport is created which contains subset rows of the heatmap.
26
+
25 27
 This function is only for internal use.
26 28
 }
27 29
 \value{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
... ...
@@ -8,12 +8,14 @@ Draw the heatmap body
8 8
 Draw the heatmap body
9 9
 }
10 10
 \usage{
11
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
11
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
12
+}
12 13
 \arguments{
13 14
 
14 15
   \item{object}{a \code{\link{Heatmap-class}} object.}
15 16
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
16 17
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
18
+
17 19
 }
18 20
 \details{
19 21
 The matrix can be split into several parts by rows if \code{km} or \code{split} is 
... ...
@@ -31,4 +33,5 @@ Zuguang Gu <z.gu@dkfz.de>
31 33
 \examples{
32 34
 # no example for this internal method
33 35
 NULL
36
+
34 37
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
... ...
@@ -3,11 +3,9 @@
3 3
 \alias{draw_heatmap_body}
4 4
 \title{
5 5
 Draw the heatmap body
6
-
7 6
 }
8 7
 \description{
9 8
 Draw the heatmap body
10
-
11 9
 }
12 10
 \usage{
13 11
 \S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
... ...
@@ -21,32 +19,16 @@ Draw the heatmap body
21 19
 The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22 20
 specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23 21
 there will be gaps between rows to identify different row-slice.
24
-
25 22
 A viewport is created which contains subset rows of the heatmap.
26
-
27 23
 This function is only for internal use.
28
-
29 24
 }
30 25
 \value{
31 26
 This function returns no value.
32
-
33 27
 }
34 28
 \author{
35 29
 Zuguang Gu <z.gu@dkfz.de>
36
-
37 30
 }
38 31
 \examples{
39
-
40
-
41
-
42
-
43
-
44
-
45
-
46
-
47
-
48
-
49
-
50
-
51 32
 # no example for this internal method
52
-NULL}
33
+NULL
34
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
Showing1 changed files
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@@ -43,5 +43,10 @@ Zuguang Gu <z.gu@dkfz.de>
43 43
 
44 44
 
45 45
 
46
+
47
+
48
+
49
+
50
+
46 51
 # no example for this internal method
47 52
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
Showing1 changed files
... ...
@@ -42,5 +42,6 @@ Zuguang Gu <z.gu@dkfz.de>
42 42
 
43 43
 
44 44
 
45
+
45 46
 # no example for this internal method
46 47
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
Showing1 changed files
... ...
@@ -38,5 +38,9 @@ Zuguang Gu <z.gu@dkfz.de>
38 38
 \examples{
39 39
 
40 40
 
41
+
42
+
43
+
44
+
41 45
 # no example for this internal method
42 46
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
Showing1 changed files
... ...
@@ -36,5 +36,7 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
+
40
+
39 41
 # no example for this internal method
40 42
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
Showing1 changed files
... ...
@@ -36,6 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
-
40 39
 # no example for this internal method
41 40
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
Showing1 changed files
... ...
@@ -36,5 +36,6 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
+
39 40
 # no example for this internal method
40 41
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
Showing1 changed files
... ...
@@ -36,7 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
-
40
-
41 39
 # no example for this internal method
42 40
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
Showing1 changed files
... ...
@@ -36,5 +36,7 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
+
40
+
39 41
 # no example for this internal method
40 42
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
Showing1 changed files
... ...
@@ -36,9 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
-
40
-
41 39
 # no example for this internal method
42
-NULL
43
-
44
-}
40
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
Showing1 changed files
... ...
@@ -37,6 +37,7 @@ Zuguang Gu <z.gu@dkfz.de>
37 37
 }
38 38
 \examples{
39 39
 
40
+
40 41
 # no example for this internal method
41 42
 NULL
42 43
 
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
Showing1 changed files
... ...
@@ -36,5 +36,8 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
 
37 37
 }
38 38
 \examples{
39
+
39 40
 # no example for this internal method
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-NULL}
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+NULL
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+
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+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
Showing1 changed files
... ...
@@ -2,45 +2,39 @@
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3 3
 \alias{draw_heatmap_body}
4 4
 \title{
5
-Draw the heatmap body  
6
-
5
+Draw the heatmap body
7 6
 
8 7
 }
9 8
 \description{
10
-Draw the heatmap body  
11
-
9
+Draw the heatmap body
12 10
 
13 11
 }
14 12
 \usage{
15
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16
-}
13
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
17 14
 \arguments{
18 15
 
19 16
   \item{object}{a \code{\link{Heatmap-class}} object.}
20 17
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21 18
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22
-
23 19
 }
24 20
 \details{
25
-The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.  
21
+The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22
+specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23
+there will be gaps between rows to identify different row-slice.
26 24
 
27
-A viewport is created which contains subset rows of the heatmap.  
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-
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-This function is only for internal use.  
25
+A viewport is created which contains subset rows of the heatmap.
30 26
 
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+This function is only for internal use.
31 28
 
32 29
 }
33 30
 \value{
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-This function returns no value.  
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-
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+This function returns no value.
36 32
 
37 33
 }
38 34
 \author{
39
-Zuguang Gu <z.gu@dkfz.de>  
40
-
35
+Zuguang Gu <z.gu@dkfz.de>
41 36
 
42 37
 }
43 38
 \examples{
44 39
 # no example for this internal method
45
-NULL
46
-}
40
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
... ...
@@ -2,39 +2,45 @@
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3 3
 \alias{draw_heatmap_body}
4 4
 \title{
5
-Draw the heatmap body
5
+Draw the heatmap body  
6
+
6 7
 
7 8
 }
8 9
 \description{
9
-Draw the heatmap body
10
+Draw the heatmap body  
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+
10 12
 
11 13
 }
12 14
 \usage{
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-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
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+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16
+}
14 17
 \arguments{
15 18
 
16 19
   \item{object}{a \code{\link{Heatmap-class}} object.}
17 20
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
18 21
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22
+
19 23
 }
20 24
 \details{
21
-The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22
-specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23
-there will be gaps between rows to identify different row-slice.
25
+The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.  
24 26
 
25
-A viewport is created which contains subset rows of the heatmap.
27
+A viewport is created which contains subset rows of the heatmap.  
28
+
29
+This function is only for internal use.  
26 30
 
27
-This function is only for internal use.
28 31
 
29 32
 }
30 33
 \value{
31
-This function returns no value.
34
+This function returns no value.  
35
+
32 36
 
33 37
 }
34 38
 \author{
35
-Zuguang Gu <z.gu@dkfz.de>
39
+Zuguang Gu <z.gu@dkfz.de>  
40
+
36 41
 
37 42
 }
38 43
 \examples{
39 44
 # no example for this internal method
40
-NULL}
45
+NULL
46
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
... ...
@@ -2,45 +2,39 @@
2 2
 \alias{draw_heatmap_body,Heatmap-method}
3 3
 \alias{draw_heatmap_body}
4 4
 \title{
5
-Draw the heatmap body  
6
-
5
+Draw the heatmap body
7 6
 
8 7
 }
9 8
 \description{
10
-Draw the heatmap body  
11
-
9
+Draw the heatmap body
12 10
 
13 11
 }
14 12
 \usage{
15
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16
-}
13
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
17 14
 \arguments{
18 15
 
19 16
   \item{object}{a \code{\link{Heatmap-class}} object.}
20 17
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21 18
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22
-
23 19
 }
24 20
 \details{
25
-The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.  
21
+The matrix can be split into several parts by rows if \code{km} or \code{split} is 
22
+specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, 
23
+there will be gaps between rows to identify different row-slice.
26 24
 
27
-A viewport is created which contains subset rows of the heatmap.  
28
-
29
-This function is only for internal use.  
25
+A viewport is created which contains subset rows of the heatmap.
30 26
 
27
+This function is only for internal use.
31 28
 
32 29
 }
33 30
 \value{
34
-This function returns no value.  
35
-
31
+This function returns no value.
36 32
 
37 33
 }
38 34
 \author{
39
-Zuguang Gu <z.gu@dkfz.de>  
40
-
35
+Zuguang Gu <z.gu@dkfz.de>
41 36
 
42 37
 }
43 38
 \examples{
44 39
 # no example for this internal method
45
-NULL
46
-}
40
+NULL}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
Showing1 changed files
1 1
new file mode 100644
... ...
@@ -0,0 +1,46 @@
1
+\name{draw_heatmap_body-Heatmap-method}
2
+\alias{draw_heatmap_body,Heatmap-method}
3
+\alias{draw_heatmap_body}
4
+\title{
5
+Draw the heatmap body  
6
+
7
+
8
+}
9
+\description{
10
+Draw the heatmap body  
11
+
12
+
13
+}
14
+\usage{
15
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16
+}
17
+\arguments{
18
+
19
+  \item{object}{a \code{\link{Heatmap-class}} object.}
20
+  \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21
+  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22
+
23
+}
24
+\details{
25
+The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.  
26
+
27
+A viewport is created which contains subset rows of the heatmap.  
28
+
29
+This function is only for internal use.  
30
+
31
+
32
+}
33
+\value{
34
+This function returns no value.  
35
+
36
+
37
+}
38
+\author{
39
+Zuguang Gu <z.gu@dkfz.de>  
40
+
41
+
42
+}
43
+\examples{
44
+# no example for this internal method
45
+NULL
46
+}