#### generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
Showing1 changed files
 1 1 deleted file mode 100644 ... ... @@ -1,36 +0,0 @@ 1 -\name{draw_heatmap_body-Heatmap-method} 2 -\alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 -\title{ 5 -Draw Heatmap Body 6 -} 7 -\description{ 8 -Draw Heatmap Body 9 -} 10 -\usage{ 11 -\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...) 12 -} 13 -\arguments{ 14 - 15 - \item{object}{A \code{\link{Heatmap-class}} object.} 16 - \item{kr}{Row slice index.} 17 - \item{kc}{Column slice index.} 18 - \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.} 19 - 20 -} 21 -\details{ 22 -A viewport is created which contains subset rows and columns of the heatmap. 23 - 24 -This function is only for internal use. 25 -} 26 -\value{ 27 -This function returns no value. 28 -} 29 -\author{ 30 -Zuguang Gu  31 -} 32 -\examples{ 33 -# There is no example 34 -NULL 35 - 36 -}

#### add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
Showing1 changed files
 ... ... @@ -1,5 +1,6 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 3 4  \title{ 4 5  Draw Heatmap Body 5 6  } ... ... @@ -28,8 +29,8 @@ This function returns no value. 28 29  \author{ 29 30  Zuguang Gu  30 31  } 31 -\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 + 35 36  }

#### use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
 ... ... @@ -1,6 +1,5 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 3  \title{ 5 4  Draw Heatmap Body 6 5  } ... ... @@ -29,8 +28,8 @@ This function returns no value. 29 28  \author{ 30 29  Zuguang Gu  31 30  } 31 +\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 - 36 35  }

#### set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
 ... ... @@ -1,5 +1,6 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 3 4  \title{ 4 5  Draw Heatmap Body 5 6  } ... ... @@ -28,8 +29,8 @@ This function returns no value. 28 29  \author{ 29 30  Zuguang Gu  30 31  } 31 -\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 + 35 36  }

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
 ... ... @@ -1,6 +1,5 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 3  \title{ 5 4  Draw Heatmap Body 6 5  } ... ... @@ -29,8 +28,8 @@ This function returns no value. 29 28  \author{ 30 29  Zuguang Gu  31 30  } 31 +\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 - 36 35  }

#### documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
Showing1 changed files
 ... ... @@ -2,10 +2,10 @@ 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 3  \alias{draw_heatmap_body} 4 4  \title{ 5 -Draw the Heatmap Body 5 +Draw Heatmap Body 6 6  } 7 7  \description{ 8 -Draw the Heatmap Body 8 +Draw Heatmap Body 9 9  } 10 10  \usage{ 11 11  \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)

#### fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
 ... ... @@ -1,5 +1,6 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 3 4  \title{ 4 5  Draw the Heatmap Body 5 6  } ... ... @@ -28,8 +29,8 @@ This function returns no value. 28 29  \author{ 29 30  Zuguang Gu  30 31  } 31 -\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 + 35 36  }

#### update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
 ... ... @@ -1,6 +1,5 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 3  \title{ 5 4  Draw the Heatmap Body 6 5  } ... ... @@ -29,8 +28,8 @@ This function returns no value. 29 28  \author{ 30 29  Zuguang Gu  31 30  } 31 +\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 - 36 35  }

#### R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
 ... ... @@ -1,5 +1,6 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 3 4  \title{ 4 5  Draw the Heatmap Body 5 6  } ... ... @@ -28,8 +29,8 @@ This function returns no value. 28 29  \author{ 29 30  Zuguang Gu  30 31  } 31 -\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 + 35 36  }

#### update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
 ... ... @@ -1,11 +1,10 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 3  \title{ 5 -Draw the heatmap body 4 +Draw the Heatmap Body 6 5  } 7 6  \description{ 8 -Draw the heatmap body 7 +Draw the Heatmap Body 9 8  } 10 9  \usage{ 11 10  \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...) ... ... @@ -15,7 +14,7 @@ Draw the heatmap body 15 14  \item{object}{A \code{\link{Heatmap-class}} object.} 16 15  \item{kr}{Row slice index.} 17 16  \item{kc}{Column slice index.} 18 - \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.} 17 + \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.} 19 18   20 19  } 21 20  \details{ ... ... @@ -29,8 +28,8 @@ This function returns no value. 29 28  \author{ 30 29  Zuguang Gu  31 30  } 31 +\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 - 36 35  }

#### vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
 ... ... @@ -1,5 +1,6 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 3 4  \title{ 4 5  Draw the heatmap body 5 6  } ... ... @@ -28,8 +29,8 @@ This function returns no value. 28 29  \author{ 29 30  Zuguang Gu  30 31  } 31 -\alias{draw_heatmap_body} 32 32  \examples{ 33 33  # There is no example 34 34  NULL 35 + 35 36  }

#### R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
 1 1 old mode 100755 2 2 new mode 100644 ... ... @@ -1,6 +1,5 @@ 1 1  \name{draw_heatmap_body-Heatmap-method} 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 -\alias{draw_heatmap_body} 4 3  \title{ 5 4  Draw the heatmap body 6 5  } ... ... @@ -8,21 +7,18 @@ Draw the heatmap body 8 7  Draw the heatmap body 9 8  } 10 9  \usage{ 11 -\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 10 +\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...) 12 11  } 13 12  \arguments{ 14 13   15 - \item{object}{a \code{\link{Heatmap-class}} object.} 16 - \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 17 - \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 14 + \item{object}{A \code{\link{Heatmap-class}} object.} 15 + \item{kr}{Row slice index.} 16 + \item{kc}{Column slice index.} 17 + \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.} 18 18   19 19  } 20 20  \details{ 21 -The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 -specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 -there will be gaps between rows to identify different row-slice. 24 - 25 -A viewport is created which contains subset rows of the heatmap. 21 +A viewport is created which contains subset rows and columns of the heatmap. 26 22   27 23  This function is only for internal use. 28 24  } ... ... @@ -32,8 +28,8 @@ This function returns no value. 32 28  \author{ 33 29  Zuguang Gu  34 30  } 31 +\alias{draw_heatmap_body} 35 32  \examples{ 36 -# no example for this internal method 33 +# There is no example 37 34  NULL 38 - 39 35  }

#### Merge branch 'master' into devel

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
 1 1 old mode 100644 2 2 new mode 100755

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: db263179df8a28bd25eb5afcf64aa9c37b2fdd32

refresh docs

z.gu authored on 12/08/2015 22:49:59
Showing1 changed files
 ... ... @@ -21,7 +21,9 @@ Draw the heatmap body 21 21  The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 22  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 23  there will be gaps between rows to identify different row-slice. 24 + 24 25  A viewport is created which contains subset rows of the heatmap. 26 + 25 27  This function is only for internal use. 26 28  } 27 29  \value{

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap

Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
 ... ... @@ -8,12 +8,14 @@ Draw the heatmap body 8 8  Draw the heatmap body 9 9  } 10 10  \usage{ 11 -\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)} 11 +\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 12 +} 12 13  \arguments{ 13 14   14 15  \item{object}{a \code{\link{Heatmap-class}} object.} 15 16  \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 16 17  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 18 + 17 19  } 18 20  \details{ 19 21  The matrix can be split into several parts by rows if \code{km} or \code{split} is  ... ... @@ -31,4 +33,5 @@ Zuguang Gu  31 33  \examples{ 32 34  # no example for this internal method 33 35  NULL 36 + 34 37  }

#### Commit made by the Bioconductor Git-SVN bridge.

refreshed documentations

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
 ... ... @@ -3,11 +3,9 @@ 3 3  \alias{draw_heatmap_body} 4 4  \title{ 5 5  Draw the heatmap body 6 - 7 6  } 8 7  \description{ 9 8  Draw the heatmap body 10 - 11 9  } 12 10  \usage{ 13 11  \S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)} ... ... @@ -21,32 +19,16 @@ Draw the heatmap body 21 19  The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 20  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 21  there will be gaps between rows to identify different row-slice. 24 - 25 22  A viewport is created which contains subset rows of the heatmap. 26 - 27 23  This function is only for internal use. 28 - 29 24  } 30 25  \value{ 31 26  This function returns no value. 32 - 33 27  } 34 28  \author{ 35 29  Zuguang Gu  36 - 37 30  } 38 31  \examples{ 39 - 40 - 41 - 42 - 43 - 44 - 45 - 46 - 47 - 48 - 49 - 50 - 51 32  # no example for this internal method 52 -NULL} 33 +NULL 34 +}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications

z.gu authored on 10/08/2015 22:17:54
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 ... ... @@ -43,5 +43,10 @@ Zuguang Gu  43 43   44 44   45 45   46 + 47 + 48 + 49 + 50 + 46 51  # no example for this internal method 47 52  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions

z.gu authored on 06/08/2015 17:46:06
Showing1 changed files
 ... ... @@ -42,5 +42,6 @@ Zuguang Gu  42 42   43 43   44 44   45 + 45 46  # no example for this internal method 46 47  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions

z.gu authored on 06/08/2015 16:40:59
Showing1 changed files
 ... ... @@ -38,5 +38,9 @@ Zuguang Gu  38 38  \examples{ 39 39   40 40   41 + 42 + 43 + 44 + 41 45  # no example for this internal method 42 46  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

allow reordering

z.gu authored on 04/08/2015 20:24:37
Showing1 changed files
 ... ... @@ -36,5 +36,7 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 + 40 + 39 41  # no example for this internal method 40 42  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

remove plot.HeatmapList and print.HeatmapList

z.gu authored on 18/07/2015 18:14:29
Showing1 changed files
 ... ... @@ -36,6 +36,5 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 - 40 39  # no example for this internal method 41 40  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap

Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos

Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot

z.gu authored on 16/07/2015 15:21:23
Showing1 changed files
 ... ... @@ -36,5 +36,6 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 + 39 40  # no example for this internal method 40 41  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now

z.gu authored on 13/07/2015 21:26:16
Showing1 changed files
 ... ... @@ -36,7 +36,5 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 - 40 - 41 39  # no example for this internal method 42 40  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported

z.gu authored on 13/07/2015 10:21:55
Showing1 changed files
 ... ... @@ -36,5 +36,7 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 + 40 + 39 41  # no example for this internal method 40 42  NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap

Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object

z.gu authored on 06/07/2015 22:31:19
Showing1 changed files
 ... ... @@ -36,9 +36,5 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 - 40 - 41 39  # no example for this internal method 42 -NULL 43 - 44 -} 40 +NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations

z.gu authored on 23/06/2015 10:24:06
Showing1 changed files
 ... ... @@ -37,6 +37,7 @@ Zuguang Gu  37 37  } 38 38  \examples{ 39 39   40 + 40 41  # no example for this internal method 41 42  NULL 42 43 

#### Commit made by the Bioconductor Git-SVN bridge.

refreshed documentations

z.gu authored on 23/06/2015 08:33:59
Showing1 changed files
 ... ... @@ -36,5 +36,8 @@ Zuguang Gu  36 36   37 37  } 38 38  \examples{ 39 + 39 40  # no example for this internal method 40 -NULL} 41 +NULL 42 + 43 +}

#### Commit made by the Bioconductor Git-SVN bridge.

refresh documentations and NAMESPACE

z.gu authored on 22/06/2015 21:57:04
Showing1 changed files
 ... ... @@ -2,45 +2,39 @@ 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 3  \alias{draw_heatmap_body} 4 4  \title{ 5 -Draw the heatmap body  6 - 5 +Draw the heatmap body 7 6   8 7  } 9 8  \description{ 10 -Draw the heatmap body  11 - 9 +Draw the heatmap body 12 10   13 11  } 14 12  \usage{ 15 -\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 16 -} 13 +\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)} 17 14  \arguments{ 18 15   19 16  \item{object}{a \code{\link{Heatmap-class}} object.} 20 17  \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 21 18  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 22 - 23 19  } 24 20  \details{ 25 -The matrix can be split into several parts by rows if \code{km} or \code{split} is specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, there will be gaps between rows to identify different row-slice.  21 +The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 +specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 +there will be gaps between rows to identify different row-slice. 26 24   27 -A viewport is created which contains subset rows of the heatmap.  28 - 29 -This function is only for internal use.  25 +A viewport is created which contains subset rows of the heatmap. 30 26   27 +This function is only for internal use. 31 28   32 29  } 33 30  \value{ 34 -This function returns no value.  35 - 31 +This function returns no value. 36 32   37 33  } 38 34  \author{ 39 -Zuguang Gu  40 - 35 +Zuguang Gu  41 36   42 37  } 43 38  \examples{ 44 39  # no example for this internal method 45 -NULL 46 -} 40 +NULL}

#### Commit made by the Bioconductor Git-SVN bridge.

rotation for heatmap title supported

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
 ... ... @@ -2,39 +2,45 @@ 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 3  \alias{draw_heatmap_body} 4 4  \title{ 5 -Draw the heatmap body 5 +Draw the heatmap body  6 + 6 7   7 8  } 8 9  \description{ 9 -Draw the heatmap body 10 +Draw the heatmap body  11 + 10 12   11 13  } 12 14  \usage{ 13 -\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)} 15 +\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 16 +} 14 17  \arguments{ 15 18   16 19  \item{object}{a \code{\link{Heatmap-class}} object.} 17 20  \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 18 21  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 22 + 19 23  } 20 24  \details{ 21 -The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 -specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 -there will be gaps between rows to identify different row-slice. 25 +The matrix can be split into several parts by rows if \code{km} or \code{split} is specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, there will be gaps between rows to identify different row-slice.  24 26   25 -A viewport is created which contains subset rows of the heatmap. 27 +A viewport is created which contains subset rows of the heatmap.  28 + 29 +This function is only for internal use.  26 30   27 -This function is only for internal use. 28 31   29 32  } 30 33  \value{ 31 -This function returns no value. 34 +This function returns no value.  35 + 32 36   33 37  } 34 38  \author{ 35 -Zuguang Gu  39 +Zuguang Gu  40 + 36 41   37 42  } 38 43  \examples{ 39 44  # no example for this internal method 40 -NULL} 45 +NULL 46 +}

#### Commit made by the Bioconductor Git-SVN bridge.

check row orders

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
 ... ... @@ -2,45 +2,39 @@ 2 2  \alias{draw_heatmap_body,Heatmap-method} 3 3  \alias{draw_heatmap_body} 4 4  \title{ 5 -Draw the heatmap body  6 - 5 +Draw the heatmap body 7 6   8 7  } 9 8  \description{ 10 -Draw the heatmap body  11 - 9 +Draw the heatmap body 12 10   13 11  } 14 12  \usage{ 15 -\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 16 -} 13 +\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)} 17 14  \arguments{ 18 15   19 16  \item{object}{a \code{\link{Heatmap-class}} object.} 20 17  \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 21 18  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 22 - 23 19  } 24 20  \details{ 25 -The matrix can be split into several parts by rows if \code{km} or \code{split} is specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, there will be gaps between rows to identify different row-slice.  21 +The matrix can be split into several parts by rows if \code{km} or \code{split} is  22 +specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  23 +there will be gaps between rows to identify different row-slice. 26 24   27 -A viewport is created which contains subset rows of the heatmap.  28 - 29 -This function is only for internal use.  25 +A viewport is created which contains subset rows of the heatmap. 30 26   27 +This function is only for internal use. 31 28   32 29  } 33 30  \value{ 34 -This function returns no value.  35 - 31 +This function returns no value. 36 32   37 33  } 38 34  \author{ 39 -Zuguang Gu  40 - 35 +Zuguang Gu  41 36   42 37  } 43 38  \examples{ 44 39  # no example for this internal method 45 -NULL 46 -} 40 +NULL}

#### add package to repository

ComplexHeatmap/ podkat/ RBM/

 1 1 new file mode 100644 ... ... @@ -0,0 +1,46 @@ 1 +\name{draw_heatmap_body-Heatmap-method} 2 +\alias{draw_heatmap_body,Heatmap-method} 3 +\alias{draw_heatmap_body} 4 +\title{ 5 +Draw the heatmap body  6 + 7 + 8 +} 9 +\description{ 10 +Draw the heatmap body  11 + 12 + 13 +} 14 +\usage{ 15 +\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...) 16 +} 17 +\arguments{ 18 + 19 + \item{object}{a \code{\link{Heatmap-class}} object.} 20 + \item{k}{a matrix may be split by rows, the value identifies which row-slice.} 21 + \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.} 22 + 23 +} 24 +\details{ 25 +The matrix can be split into several parts by rows if \code{km} or \code{split} is specified when initializing the \code{\link{Heatmap}} object. If the matrix is split, there will be gaps between rows to identify different row-slice.  26 + 27 +A viewport is created which contains subset rows of the heatmap.  28 + 29 +This function is only for internal use.  30 + 31 + 32 +} 33 +\value{ 34 +This function returns no value.  35 + 36 + 37 +} 38 +\author{ 39 +Zuguang Gu  40 + 41 + 42 +} 43 +\examples{ 44 +# no example for this internal method 45 +NULL 46 +}