1. ComplexHeatmap
  2. man
  3. draw_heatmap_body-Heatmap-method.rd
Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @1cb7fea
1 1 
deleted file mode 100644
... ... 
@@ -1,36 +0,0 @@
1 
-\name{draw_heatmap_body-Heatmap-method}
2 
-\alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 
-\title{
5 
-Draw Heatmap Body
6 
-}
7 
-\description{
8 
-Draw Heatmap Body
9 
-}
10 
-\usage{
11 
-\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
12 
-}
13 
-\arguments{
14 
-
15 
-  \item{object}{A \code{\link{Heatmap-class}} object.}
16 
-  \item{kr}{Row slice index.}
17 
-  \item{kc}{Column slice index.}
18 
-  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.}
19 
-
20 
-}
21 
-\details{
22 
-A viewport is created which contains subset rows and columns of the heatmap.
23 
-
24 
-This function is only for internal use.
25 
-}
26 
-\value{
27 
-This function returns no value.
28 
-}
29 
-\author{
30 
-Zuguang Gu <z.gu@dkfz.de>
31 
-}
32 
-\examples{
33 
-# There is no example
34 
-NULL
35 
-
36 
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @9e95ee3
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
3 4 
 \title{
4 5 
 Draw Heatmap Body
5 6 
 }
... ... 
@@ -28,8 +29,8 @@ This function returns no value.
28 29 
 \author{
29 30 
 Zuguang Gu <z.gu@dkfz.de>
30 31 
 }
31 
-\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
+
35 36 
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @21aea96
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 3 
 \title{
5 4 
 Draw Heatmap Body
6 5 
 }
... ... 
@@ -29,8 +28,8 @@ This function returns no value.
29 28 
 \author{
30 29 
 Zuguang Gu <z.gu@dkfz.de>
31 30 
 }
31 
+\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
-
36 35 
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @69345c7
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
3 4 
 \title{
4 5 
 Draw Heatmap Body
5 6 
 }
... ... 
@@ -28,8 +29,8 @@ This function returns no value.
28 29 
 \author{
29 30 
 Zuguang Gu <z.gu@dkfz.de>
30 31 
 }
31 
-\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
+
35 36 
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @948414f
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 3 
 \title{
5 4 
 Draw Heatmap Body
6 5 
 }
... ... 
@@ -29,8 +28,8 @@ This function returns no value.
29 28 
 \author{
30 29 
 Zuguang Gu <z.gu@dkfz.de>
31 30 
 }
31 
+\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
-
36 35 
 }
Browse code

documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @3c40a7c
... ... 
@@ -2,10 +2,10 @@
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 3 
 \alias{draw_heatmap_body}
4 4 
 \title{
5 
-Draw the Heatmap Body
5 
+Draw Heatmap Body
6 6 
 }
7 7 
 \description{
8 
-Draw the Heatmap Body
8 
+Draw Heatmap Body
9 9 
 }
10 10 
 \usage{
11 11 
 \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @864bd88
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
3 4 
 \title{
4 5 
 Draw the Heatmap Body
5 6 
 }
... ... 
@@ -28,8 +29,8 @@ This function returns no value.
28 29 
 \author{
29 30 
 Zuguang Gu <z.gu@dkfz.de>
30 31 
 }
31 
-\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
+
35 36 
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @d9834c5
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 3 
 \title{
5 4 
 Draw the Heatmap Body
6 5 
 }
... ... 
@@ -29,8 +28,8 @@ This function returns no value.
29 28 
 \author{
30 29 
 Zuguang Gu <z.gu@dkfz.de>
31 30 
 }
31 
+\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
-
36 35 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @b8dacfc
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
3 4 
 \title{
4 5 
 Draw the Heatmap Body
5 6 
 }
... ... 
@@ -28,8 +29,8 @@ This function returns no value.
28 29 
 \author{
29 30 
 Zuguang Gu <z.gu@dkfz.de>
30 31 
 }
31 
-\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
+
35 36 
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @1a56796
... ... 
@@ -1,11 +1,10 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 3 
 \title{
5 
-Draw the heatmap body
4 
+Draw the Heatmap Body
6 5 
 }
7 6 
 \description{
8 
-Draw the heatmap body
7 
+Draw the Heatmap Body
9 8 
 }
10 9 
 \usage{
11 10 
 \S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
... ... 
@@ -15,7 +14,7 @@ Draw the heatmap body
15 14 
   \item{object}{A \code{\link{Heatmap-class}} object.}
16 15 
   \item{kr}{Row slice index.}
17 16 
   \item{kc}{Column slice index.}
18 
-  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.}
17 
+  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the slice of heatmap body.}
19 18
20 19 
 }
21 20 
 \details{
... ... 
@@ -29,8 +28,8 @@ This function returns no value.
29 28 
 \author{
30 29 
 Zuguang Gu <z.gu@dkfz.de>
31 30 
 }
31 
+\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
-
36 35 
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @249fdfa
... ... 
@@ -1,5 +1,6 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
3 4 
 \title{
4 5 
 Draw the heatmap body
5 6 
 }
... ... 
@@ -28,8 +29,8 @@ This function returns no value.
28 29 
 \author{
29 30 
 Zuguang Gu <z.gu@dkfz.de>
30 31 
 }
31 
-\alias{draw_heatmap_body}
32 32 
 \examples{
33 33 
 # There is no example
34 34 
 NULL
35 
+
35 36 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @ad35494
1 1 
old mode 100755
2 2 
new mode 100644
... ... 
@@ -1,6 +1,5 @@
1 1 
 \name{draw_heatmap_body-Heatmap-method}
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 
-\alias{draw_heatmap_body}
4 3 
 \title{
5 4 
 Draw the heatmap body
6 5 
 }
... ... 
@@ -8,21 +7,18 @@ Draw the heatmap body
8 7 
 Draw the heatmap body
9 8 
 }
10 9 
 \usage{
11 
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
10 
+\S4method{draw_heatmap_body}{Heatmap}(object, kr = 1, kc = 1, ...)
12 11 
 }
13 12 
 \arguments{
14 13
15 
-  \item{object}{a \code{\link{Heatmap-class}} object.}
16 
-  \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
17 
-  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
14 
+  \item{object}{A \code{\link{Heatmap-class}} object.}
15 
+  \item{kr}{Row slice index.}
16 
+  \item{kc}{Column slice index.}
17 
+  \item{...}{Pass to \code{\link[grid]{viewport}} which includes the subset of heatmap body.}
18 18
19 19 
 }
20 20 
 \details{
21 
-The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 
-specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 
-there will be gaps between rows to identify different row-slice.
24 
-
25 
-A viewport is created which contains subset rows of the heatmap.
21 
+A viewport is created which contains subset rows and columns of the heatmap.
26 22
27 23 
 This function is only for internal use.
28 24 
 }
... ... 
@@ -32,8 +28,8 @@ This function returns no value.
32 28 
 \author{
33 29 
 Zuguang Gu <z.gu@dkfz.de>
34 30 
 }
31 
+\alias{draw_heatmap_body}
35 32 
 \examples{
36 
-# no example for this internal method
33 
+# There is no example
37 34 
 NULL
38 
-
39 35 
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @8e55abf
1 1 
old mode 100644
2 2 
new mode 100755
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: db263179df8a28bd25eb5afcf64aa9c37b2fdd32

refresh docs



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107358 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:49:59
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @7ab3fd2
... ... 
@@ -21,7 +21,9 @@ Draw the heatmap body
21 21 
 The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 22 
 specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 23 
 there will be gaps between rows to identify different row-slice.
24 
+
24 25 
 A viewport is created which contains subset rows of the heatmap.
26 
+
25 27 
 This function is only for internal use.
26 28 
 }
27 29 
 \value{
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @ba8a507
... ... 
@@ -8,12 +8,14 @@ Draw the heatmap body
8 8 
 Draw the heatmap body
9 9 
 }
10 10 
 \usage{
11 
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
11 
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
12 
+}
12 13 
 \arguments{
13 14
14 15 
   \item{object}{a \code{\link{Heatmap-class}} object.}
15 16 
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
16 17 
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
18 
+
17 19 
 }
18 20 
 \details{
19 21 
 The matrix can be split into several parts by rows if \code{km} or \code{split} is
... ... 
@@ -31,4 +33,5 @@ Zuguang Gu <z.gu@dkfz.de>
31 33 
 \examples{
32 34 
 # no example for this internal method
33 35 
 NULL
36 
+
34 37 
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @f597719
... ... 
@@ -3,11 +3,9 @@
3 3 
 \alias{draw_heatmap_body}
4 4 
 \title{
5 5 
 Draw the heatmap body
6 
-
7 6 
 }
8 7 
 \description{
9 8 
 Draw the heatmap body
10 
-
11 9 
 }
12 10 
 \usage{
13 11 
 \S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
... ... 
@@ -21,32 +19,16 @@ Draw the heatmap body
21 19 
 The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 20 
 specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 21 
 there will be gaps between rows to identify different row-slice.
24 
-
25 22 
 A viewport is created which contains subset rows of the heatmap.
26 
-
27 23 
 This function is only for internal use.
28 
-
29 24 
 }
30 25 
 \value{
31 26 
 This function returns no value.
32 
-
33 27 
 }
34 28 
 \author{
35 29 
 Zuguang Gu <z.gu@dkfz.de>
36 
-
37 30 
 }
38 31 
 \examples{
39 
-
40 
-
41 
-
42 
-
43 
-
44 
-
45 
-
46 
-
47 
-
48 
-
49 
-
50 
-
51 32 
 # no example for this internal method
52 
-NULL}
33 
+NULL
34 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @5ab2cb8
... ... 
@@ -43,5 +43,10 @@ Zuguang Gu <z.gu@dkfz.de>
43 43
44 44
45 45
46 
+
47 
+
48 
+
49 
+
50 
+
46 51 
 # no example for this internal method
47 52 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @aee203e
... ... 
@@ -42,5 +42,6 @@ Zuguang Gu <z.gu@dkfz.de>
42 42
43 43
44 44
45 
+
45 46 
 # no example for this internal method
46 47 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @7f268ee
... ... 
@@ -38,5 +38,9 @@ Zuguang Gu <z.gu@dkfz.de>
38 38 
 \examples{
39 39
40 40
41 
+
42 
+
43 
+
44 
+
41 45 
 # no example for this internal method
42 46 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @dc0f5a9
... ... 
@@ -36,5 +36,7 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
39 
+
40 
+
39 41 
 # no example for this internal method
40 42 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @b08d7ba
... ... 
@@ -36,6 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
39 
-
40 39 
 # no example for this internal method
41 40 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @3bb5581
... ... 
@@ -36,5 +36,6 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
39 
+
39 40 
 # no example for this internal method
40 41 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @0725063
... ... 
@@ -36,7 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
39 
-
40 
-
41 39 
 # no example for this internal method
42 40 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @2224e09
... ... 
@@ -36,5 +36,7 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
39 
+
40 
+
39 41 
 # no example for this internal method
40 42 
 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @07961c6
... ... 
@@ -36,9 +36,5 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
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-
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-
41 39 
 # no example for this internal method
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-NULL
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-
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-}
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+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @10b246c
... ... 
@@ -37,6 +37,7 @@ Zuguang Gu <z.gu@dkfz.de>
37 37 
 }
38 38 
 \examples{
39 39
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+
40 41 
 # no example for this internal method
41 42 
 NULL
42 43
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @7f6dddf
... ... 
@@ -36,5 +36,8 @@ Zuguang Gu <z.gu@dkfz.de>
36 36
37 37 
 }
38 38 
 \examples{
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+
39 40 
 # no example for this internal method
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-NULL}
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+NULL
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+
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+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @6f1307c
... ... 
@@ -2,45 +2,39 @@
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 3 
 \alias{draw_heatmap_body}
4 4 
 \title{
5 
-Draw the heatmap body
6 
-
5 
+Draw the heatmap body
7 6
8 7 
 }
9 8 
 \description{
10 
-Draw the heatmap body
11 
-
9 
+Draw the heatmap body
12 10
13 11 
 }
14 12 
 \usage{
15 
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16 
-}
13 
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
17 14 
 \arguments{
18 15
19 16 
   \item{object}{a \code{\link{Heatmap-class}} object.}
20 17 
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21 18 
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22 
-
23 19 
 }
24 20 
 \details{
25 
-The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.
21 
+The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 
+specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 
+there will be gaps between rows to identify different row-slice.
26 24
27 
-A viewport is created which contains subset rows of the heatmap.
28 
-
29 
-This function is only for internal use.
25 
+A viewport is created which contains subset rows of the heatmap.
30 26
27 
+This function is only for internal use.
31 28
32 29 
 }
33 30 
 \value{
34 
-This function returns no value.
35 
-
31 
+This function returns no value.
36 32
37 33 
 }
38 34 
 \author{
39 
-Zuguang Gu <z.gu@dkfz.de>
40 
-
35 
+Zuguang Gu <z.gu@dkfz.de>
41 36
42 37 
 }
43 38 
 \examples{
44 39 
 # no example for this internal method
45 
-NULL
46 
-}
40 
+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @4818ea9
... ... 
@@ -2,39 +2,45 @@
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 3 
 \alias{draw_heatmap_body}
4 4 
 \title{
5 
-Draw the heatmap body
5 
+Draw the heatmap body
6 
+
6 7
7 8 
 }
8 9 
 \description{
9 
-Draw the heatmap body
10 
+Draw the heatmap body
11 
+
10 12
11 13 
 }
12 14 
 \usage{
13 
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
15 
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16 
+}
14 17 
 \arguments{
15 18
16 19 
   \item{object}{a \code{\link{Heatmap-class}} object.}
17 20 
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
18 21 
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22 
+
19 23 
 }
20 24 
 \details{
21 
-The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 
-specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 
-there will be gaps between rows to identify different row-slice.
25 
+The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.
24 26
25 
-A viewport is created which contains subset rows of the heatmap.
27 
+A viewport is created which contains subset rows of the heatmap.
28 
+
29 
+This function is only for internal use.
26 30
27 
-This function is only for internal use.
28 31
29 32 
 }
30 33 
 \value{
31 
-This function returns no value.
34 
+This function returns no value.
35 
+
32 36
33 37 
 }
34 38 
 \author{
35 
-Zuguang Gu <z.gu@dkfz.de>
39 
+Zuguang Gu <z.gu@dkfz.de>
40 
+
36 41
37 42 
 }
38 43 
 \examples{
39 44 
 # no example for this internal method
40 
-NULL}
45 
+NULL
46 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @f0eb7a9
... ... 
@@ -2,45 +2,39 @@
2 2 
 \alias{draw_heatmap_body,Heatmap-method}
3 3 
 \alias{draw_heatmap_body}
4 4 
 \title{
5 
-Draw the heatmap body
6 
-
5 
+Draw the heatmap body
7 6
8 7 
 }
9 8 
 \description{
10 
-Draw the heatmap body
11 
-
9 
+Draw the heatmap body
12 10
13 11 
 }
14 12 
 \usage{
15 
-\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16 
-}
13 
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)}
17 14 
 \arguments{
18 15
19 16 
   \item{object}{a \code{\link{Heatmap-class}} object.}
20 17 
   \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21 18 
   \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22 
-
23 19 
 }
24 20 
 \details{
25 
-The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.
21 
+The matrix can be split into several parts by rows if \code{km} or \code{split} is
22 
+specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,
23 
+there will be gaps between rows to identify different row-slice.
26 24
27 
-A viewport is created which contains subset rows of the heatmap.
28 
-
29 
-This function is only for internal use.
25 
+A viewport is created which contains subset rows of the heatmap.
30 26
27 
+This function is only for internal use.
31 28
32 29 
 }
33 30 
 \value{
34 
-This function returns no value.
35 
-
31 
+This function returns no value.
36 32
37 33 
 }
38 34 
 \author{
39 
-Zuguang Gu <z.gu@dkfz.de>
40 
-
35 
+Zuguang Gu <z.gu@dkfz.de>
41 36
42 37 
 }
43 38 
 \examples{
44 39 
 # no example for this internal method
45 
-NULL
46 
-}
40 
+NULL}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
Showing1 changed files
man/draw_heatmap_body-Heatmap-method.rd
History View file @d1da987
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,46 @@
1 
+\name{draw_heatmap_body-Heatmap-method}
2 
+\alias{draw_heatmap_body,Heatmap-method}
3 
+\alias{draw_heatmap_body}
4 
+\title{
5 
+Draw the heatmap body
6 
+
7 
+
8 
+}
9 
+\description{
10 
+Draw the heatmap body
11 
+
12 
+
13 
+}
14 
+\usage{
15 
+\S4method{draw_heatmap_body}{Heatmap}(object, k = 1, ...)
16 
+}
17 
+\arguments{
18 
+
19 
+  \item{object}{a \code{\link{Heatmap-class}} object.}
20 
+  \item{k}{a matrix may be split by rows, the value identifies which row-slice.}
21 
+  \item{...}{pass to \code{\link[grid]{viewport}}, basically for defining the position of the viewport.}
22 
+
23 
+}
24 
+\details{
25 
+The matrix can be split into several parts by rows if \code{km} or \code{split} is  specified when initializing the \code{\link{Heatmap}} object. If the matrix is split,  there will be gaps between rows to identify different row-slice.
26 
+
27 
+A viewport is created which contains subset rows of the heatmap.
28 
+
29 
+This function is only for internal use.
30 
+
31 
+
32 
+}
33 
+\value{
34 
+This function returns no value.
35 
+
36 
+
37 
+}
38 
+\author{
39 
+Zuguang Gu <z.gu@dkfz.de>
40 
+
41 
+
42 
+}
43 
+\examples{
44 
+# no example for this internal method
45 
+NULL
46 
+}