1. ComplexHeatmap
  2. man
  3. component_height-HeatmapList-method.rd
Browse code

generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
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man/component_height-HeatmapList-method.rd
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1 
-\name{component_height-HeatmapList-method}
2 
-\alias{component_height,HeatmapList-method}
3 
-\title{
4 
-Height of Heatmap List Components
5 
-}
6 
-\description{
7 
-Height of Heatmap List Components
8 
-}
9 
-\usage{
10 
-\S4method{component_height}{HeatmapList}(object, k = HEATMAP_LIST_LAYOUT_COLUMN_COMPONENT)
11 
-}
12 
-\arguments{
13 
-
14 
-  \item{object}{A \code{\link{HeatmapList-class}} object.}
15 
-  \item{k}{Which component in the heatmap list. Values are in \code{ComplexHeatmap:::HEATMAP_LIST_LAYOUT_COLUMN_COMPONENT}.}
16 
-
17 
-}
18 
-\value{
19 
-A \code{\link[grid]{unit}} object.
20 
-}
21 
-\author{
22 
-Zuguang Gu <z.gu@dkfz.de>
23 
-}
24 
-\examples{
25 
-# There is no example
26 
-NULL
27 
-
28 
-}
Browse code

add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
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 NULL
27 
+
27 28 
 }
Browse code

use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
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man/component_height-HeatmapList-method.rd
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
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 NULL
27 
-
28 27 
 }
Browse code

set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
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 NULL
27 
+
27 28 
 }
Browse code

add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
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man/component_height-HeatmapList-method.rd
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
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 NULL
27 
-
28 27 
 }
Browse code

documentation checked

Zuguang Gu authored on 23/10/2018 19:59:12
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man/component_height-HeatmapList-method.rd
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@@ -1,22 +1,22 @@
1 1 
 \name{component_height-HeatmapList-method}
2 2 
 \alias{component_height,HeatmapList-method}
3 3 
 \title{
4 
-Height of each heatmap list component
4 
+Height of Heatmap List Components
5 5 
 }
6 6 
 \description{
7 
-Height of each heatmap list component
7 
+Height of Heatmap List Components
8 8 
 }
9 9 
 \usage{
10 10 
 \S4method{component_height}{HeatmapList}(object, k = HEATMAP_LIST_LAYOUT_COLUMN_COMPONENT)
11 11 
 }
12 12 
 \arguments{
13 13
14 
-  \item{object}{a \code{\link{HeatmapList-class}} object.}
15 
-  \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
14 
+  \item{object}{A \code{\link{HeatmapList-class}} object.}
15 
+  \item{k}{Which component in the heatmap list. Values are in \code{ComplexHeatmap:::HEATMAP_LIST_LAYOUT_COLUMN_COMPONENT}.}
16 16
17 17 
 }
18 18 
 \value{
19 
-A \code{\link[grid]{unit}} object
19 
+A \code{\link[grid]{unit}} object.
20 20 
 }
21 21 
 \author{
22 22 
 Zuguang Gu <z.gu@dkfz.de>
Browse code

fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
26 26 
 NULL
27 
+
27 28 
 }
Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
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man/component_height-HeatmapList-method.rd
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
26 26 
 NULL
27 
-
28 27 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
26 26 
 NULL
27 
+
27 28 
 }
Browse code

update

jokergoo authored on 12/10/2018 15:28:37
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man/component_height-HeatmapList-method.rd
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
26 26 
 NULL
27 
-
28 27 
 }
Browse code

vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 24 
 \examples{
25 25 
 # There is no example
26 26 
 NULL
27 
+
27 28 
 }
Browse code

R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
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man/component_height-HeatmapList-method.rd
History View file @ad35494
1 1 
old mode 100755
2 2 
new mode 100644
... ... 
@@ -7,7 +7,7 @@ Height of each heatmap list component
7 7 
 Height of each heatmap list component
8 8 
 }
9 9 
 \usage{
10 
-\S4method{component_height}{HeatmapList}(object, k = 1:7)
10 
+\S4method{component_height}{HeatmapList}(object, k = HEATMAP_LIST_LAYOUT_COLUMN_COMPONENT)
11 11 
 }
12 12 
 \arguments{
13 13
... ... 
@@ -22,6 +22,6 @@ A \code{\link[grid]{unit}} object
22 22 
 Zuguang Gu <z.gu@dkfz.de>
23 23 
 }
24 24 
 \examples{
25 
-# no example for this internal method
26 
-
25 
+# There is no example
26 
+NULL
27 27 
 }
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
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man/component_height-HeatmapList-method.rd
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1 1 
old mode 100644
2 2 
new mode 100755
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
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man/component_height-HeatmapList-method.rd
History View file @ba8a507
... ... 
@@ -7,11 +7,13 @@ Height of each heatmap list component
7 7 
 Height of each heatmap list component
8 8 
 }
9 9 
 \usage{
10 
-\S4method{component_height}{HeatmapList}(object, k = 1:7)}
10 
+\S4method{component_height}{HeatmapList}(object, k = 1:7)
11 
+}
11 12 
 \arguments{
12 13
13 14 
   \item{object}{a \code{\link{HeatmapList-class}} object.}
14 15 
   \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
16 
+
15 17 
 }
16 18 
 \value{
17 19 
 A \code{\link[grid]{unit}} object
... ... 
@@ -21,4 +23,5 @@ Zuguang Gu <z.gu@dkfz.de>
21 23 
 }
22 24 
 \examples{
23 25 
 # no example for this internal method
26 
+
24 27 
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
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man/component_height-HeatmapList-method.rd
History View file @f597719
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@@ -2,11 +2,9 @@
2 2 
 \alias{component_height,HeatmapList-method}
3 3 
 \title{
4 4 
 Height of each heatmap list component
5 
-
6 5 
 }
7 6 
 \description{
8 7 
 Height of each heatmap list component
9 
-
10 8 
 }
11 9 
 \usage{
12 10 
 \S4method{component_height}{HeatmapList}(object, k = 1:7)}
... ... 
@@ -17,23 +15,10 @@ Height of each heatmap list component
17 15 
 }
18 16 
 \value{
19 17 
 A \code{\link[grid]{unit}} object
20 
-
21 18 
 }
22 19 
 \author{
23 20 
 Zuguang Gu <z.gu@dkfz.de>
24 
-
25 21 
 }
26 22 
 \examples{
27 
-
28 
-
29 
-
30 
-
31 
-
32 
-
33 
-
34 
-
35 
-
36 
-
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-
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-
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-# no example for this internal method}
23 
+# no example for this internal method
24 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
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man/component_height-HeatmapList-method.rd
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32 32
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+
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+
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+
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+
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+
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 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
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man/component_height-HeatmapList-method.rd
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@@ -30,4 +30,5 @@ Zuguang Gu <z.gu@dkfz.de>
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31 31
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+
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 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
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man/component_height-HeatmapList-method.rd
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@@ -26,4 +26,8 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
27 27
28 28
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+
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+
31 
+
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+
29 33 
 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,6 @@ Zuguang Gu <z.gu@dkfz.de>
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25 25 
 }
26 26 
 \examples{
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+
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+
27 29 
 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
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man/component_height-HeatmapList-method.rd
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24
25 25 
 }
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 \examples{
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-
28 27 
 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,5 @@ Zuguang Gu <z.gu@dkfz.de>
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 }
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 \examples{
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+
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 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
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man/component_height-HeatmapList-method.rd
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@@ -24,6 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
24 24
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 }
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 \examples{
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-
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-
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 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,6 @@ Zuguang Gu <z.gu@dkfz.de>
24 24
25 25 
 }
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 \examples{
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+
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+
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 # no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
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man/component_height-HeatmapList-method.rd
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@@ -24,8 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
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25 25 
 }
26 26 
 \examples{
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-
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-
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-# no example for this internal method
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-
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-}
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+# no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
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man/component_height-HeatmapList-method.rd
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@@ -25,6 +25,7 @@ Zuguang Gu <z.gu@dkfz.de>
25 25 
 }
26 26 
 \examples{
27 27
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+
28 29 
 # no example for this internal method
29 30
30 31 
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
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man/component_height-HeatmapList-method.rd
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@@ -24,4 +24,7 @@ Zuguang Gu <z.gu@dkfz.de>
24 24
25 25 
 }
26 26 
 \examples{
27 
-# no example for this internal method}
27 
+
28 
+# no example for this internal method
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+
30 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
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man/component_height-HeatmapList-method.rd
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@@ -1,34 +1,27 @@
1 1 
 \name{component_height-HeatmapList-method}
2 2 
 \alias{component_height,HeatmapList-method}
3 3 
 \title{
4 
-Height of each heatmap list component
5 
-
4 
+Height of each heatmap list component
6 5
7 6 
 }
8 7 
 \description{
9 
-Height of each heatmap list component
10 
-
8 
+Height of each heatmap list component
11 9
12 10 
 }
13 11 
 \usage{
14 
-\S4method{component_height}{HeatmapList}(object, k = 1:7)
15 
-}
12 
+\S4method{component_height}{HeatmapList}(object, k = 1:7)}
16 13 
 \arguments{
17 14
18 15 
   \item{object}{a \code{\link{HeatmapList-class}} object.}
19 16 
   \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
20 
-
21 17 
 }
22 18 
 \value{
23 
-A \code{\link[grid]{unit}} object
24 
-
19 
+A \code{\link[grid]{unit}} object
25 20
26 21 
 }
27 22 
 \author{
28 
-Zuguang Gu <z.gu@dkfz.de>
29 
-
23 
+Zuguang Gu <z.gu@dkfz.de>
30 24
31 25 
 }
32 26 
 \examples{
33 
-# no example for this internal method
34 
-}
27 
+# no example for this internal method}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
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man/component_height-HeatmapList-method.rd
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@@ -1,27 +1,34 @@
1 1 
 \name{component_height-HeatmapList-method}
2 2 
 \alias{component_height,HeatmapList-method}
3 3 
 \title{
4 
-Height of each heatmap list component
4 
+Height of each heatmap list component
5 
+
5 6
6 7 
 }
7 8 
 \description{
8 
-Height of each heatmap list component
9 
+Height of each heatmap list component
10 
+
9 11
10 12 
 }
11 13 
 \usage{
12 
-\S4method{component_height}{HeatmapList}(object, k = 1:7)}
14 
+\S4method{component_height}{HeatmapList}(object, k = 1:7)
15 
+}
13 16 
 \arguments{
14 17
15 18 
   \item{object}{a \code{\link{HeatmapList-class}} object.}
16 19 
   \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
20 
+
17 21 
 }
18 22 
 \value{
19 
-A \code{\link[grid]{unit}} object
23 
+A \code{\link[grid]{unit}} object
24 
+
20 25
21 26 
 }
22 27 
 \author{
23 
-Zuguang Gu <z.gu@dkfz.de>
28 
+Zuguang Gu <z.gu@dkfz.de>
29 
+
24 30
25 31 
 }
26 32 
 \examples{
27 
-# no example for this internal method}
33 
+# no example for this internal method
34 
+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
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man/component_height-HeatmapList-method.rd
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@@ -1,34 +1,27 @@
1 1 
 \name{component_height-HeatmapList-method}
2 2 
 \alias{component_height,HeatmapList-method}
3 3 
 \title{
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-Height of each heatmap list component
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-
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+Height of each heatmap list component
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 }
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 \description{
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-Height of each heatmap list component
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-
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+Height of each heatmap list component
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 }
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 \usage{
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-\S4method{component_height}{HeatmapList}(object, k = 1:7)
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-}
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+\S4method{component_height}{HeatmapList}(object, k = 1:7)}
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 \arguments{
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   \item{object}{a \code{\link{HeatmapList-class}} object.}
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   \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
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-
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 }
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 \value{
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-A \code{\link[grid]{unit}} object
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-
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+A \code{\link[grid]{unit}} object
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 }
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 \author{
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-Zuguang Gu <z.gu@dkfz.de>
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-
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+Zuguang Gu <z.gu@dkfz.de>
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 }
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 \examples{
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-# no example for this internal method
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-}
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+# no example for this internal method}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
Showing1 changed files
man/component_height-HeatmapList-method.rd
History View file @d1da987
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new file mode 100644
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+\name{component_height-HeatmapList-method}
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+\alias{component_height,HeatmapList-method}
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+\title{
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+Height of each heatmap list component
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+
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+
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+}
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+\description{
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+Height of each heatmap list component
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+
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+
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+}
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+\usage{
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+\S4method{component_height}{HeatmapList}(object, k = 1:7)
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+}
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+\arguments{
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+
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+  \item{object}{a \code{\link{HeatmapList-class}} object.}
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+  \item{k}{which component in the heatmap list, see \code{\link{HeatmapList-class}}.}
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+
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+}
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+\value{
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+A \code{\link[grid]{unit}} object
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+
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+
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+}
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+\author{
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+Zuguang Gu <z.gu@dkfz.de>
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+
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+
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+}
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+\examples{
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+# no example for this internal method
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+}