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generate documentations by pkgdown

Zuguang Gu authored on 18/10/2019 11:34:02
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-\name{AdditiveUnit}
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-\alias{AdditiveUnit}
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-\title{
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-Constructor Method for AdditiveUnit Class
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-}
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-\description{
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-Constructor Method for AdditiveUnit Class
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-}
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-\usage{
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-AdditiveUnit(...)
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-}
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-\arguments{
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-
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-  \item{...}{Black hole arguments.}
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-
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-}
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-\details{
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-This method is not used in the package.
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-}
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-\value{
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-No value is returned.
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-}
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-\author{
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-Zuguang Gu <z.gu@dkfz.de>
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-}
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-\examples{
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-# There is no example
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-NULL
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-
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-}
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add jitter argument to Heatmap()

Zuguang Gu authored on 28/09/2019 08:37:13
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@@ -26,4 +26,5 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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+
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 }
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use pkgdown to build the doc site

Zuguang Gu authored on 24/09/2019 21:01:04
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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set cluster_slice to FALSE for character matrix

Zuguang Gu authored on 18/01/2019 10:43:26
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@@ -26,4 +26,5 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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+
29 30
 }
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add NEWs

Zuguang Gu authored on 30/12/2018 08:12:22
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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fix some bugs

Zuguang Gu authored on 19/10/2018 19:08:59
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@@ -26,4 +26,5 @@ Zuguang Gu <z.gu@dkfz.de>
26 26
 \examples{
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 # There is no example
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 NULL
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+
29 30
 }
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update

Zuguang Gu authored on 17/10/2018 06:09:36
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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R CMD check passed

Zuguang Gu authored on 12/10/2018 19:19:48
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@@ -26,4 +26,5 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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+
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 }
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update

jokergoo authored on 12/10/2018 15:28:37
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@@ -11,7 +11,7 @@ AdditiveUnit(...)
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 }
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 \arguments{
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-  \item{...}{black hole arguments.}
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+  \item{...}{Black hole arguments.}
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 }
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 \details{
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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vignette check passed

Zuguang Gu authored on 20/09/2018 22:09:48
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 \examples{
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 # There is no example
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 NULL
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+
29 30
 }
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R CMD check passed

Zuguang Gu authored on 20/09/2018 12:48:08
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old mode 100755
2 2
new mode 100644
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@@ -1,10 +1,10 @@
1 1
 \name{AdditiveUnit}
2 2
 \alias{AdditiveUnit}
3 3
 \title{
4
-Constructor method for AdditiveUnit class
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+Constructor Method for AdditiveUnit Class
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 }
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 \description{
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-Constructor method for AdditiveUnit class
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+Constructor Method for AdditiveUnit Class
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 }
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 \usage{
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 AdditiveUnit(...)
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@@ -24,6 +24,6 @@ No value is returned.
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 Zuguang Gu <z.gu@dkfz.de>
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 }
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 \examples{
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-# no example for this function
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+# There is no example
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 NULL
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 }
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anoying rebase

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@111684 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 20/12/2015 21:42:51
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@@ -11,7 +11,7 @@ AdditiveUnit(...)
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 }
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 \arguments{
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-  \item{...}{arguments.}
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+  \item{...}{black hole arguments.}
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 }
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 \details{
Browse code

Merge branch 'master' into devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 07/09/2015 20:39:32
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1 1
old mode 100644
2 2
new mode 100755
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resolve conflict from master branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108131 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 03/09/2015 20:32:44
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@@ -24,7 +24,6 @@ No value is returned.
24 24
 Zuguang Gu <z.gu@dkfz.de>
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 }
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 \examples{
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-# no example
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+# no example for this function
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 NULL
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-
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 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1de356e1d1343725223e03ff696f931d80b2842b

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: 478962957a34b7a5e87c8336989bae3df54f9559

change default colors



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107356 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 12/08/2015 22:03:22
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@@ -7,10 +7,12 @@ Constructor method for AdditiveUnit class
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 Constructor method for AdditiveUnit class
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 }
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 \usage{
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-AdditiveUnit(...)}
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+AdditiveUnit(...)
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+}
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 \arguments{
12 13
 
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   \item{...}{arguments.}
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+
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 }
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 \details{
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 This method is not used in the package.
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@@ -24,4 +26,5 @@ Zuguang Gu <z.gu@dkfz.de>
24 26
 \examples{
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 # no example
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 NULL
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+
27 30
 }
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: f1b195419490dad46029cf7b681508ed21ba8c60

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107316 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 11/08/2015 10:42:08
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@@ -2,11 +2,9 @@
2 2
 \alias{AdditiveUnit}
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 \title{
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 Constructor method for AdditiveUnit class
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-
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 }
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 \description{
8 7
 Constructor method for AdditiveUnit class
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-
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 }
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 \usage{
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 AdditiveUnit(...)}
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@@ -16,28 +14,14 @@ AdditiveUnit(...)}
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 }
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 \details{
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 This method is not used in the package.
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-
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 }
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 \value{
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 No value is returned.
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-
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 }
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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-
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 }
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 \examples{
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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 # no example
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-NULL}
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+NULL
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+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 262e3960558c1f61b986f5be7a2ffd4599f704fa

comprehensive modifications



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107311 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 10/08/2015 22:17:54
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@@ -34,5 +34,10 @@ Zuguang Gu <z.gu@dkfz.de>
34 34
 
35 35
 
36 36
 
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+
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+
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+
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+
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 73171be89c157222e8e71e85daa8a37ce509a4e2

add border argument in anno_* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107201 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 17:46:06
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@@ -33,5 +33,6 @@ Zuguang Gu <z.gu@dkfz.de>
33 33
 
34 34
 
35 35
 
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 3429d28233ef2cbeafcd05307042d7c7aa54a2a2

add decorate* family functions



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107197 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/08/2015 16:40:59
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@@ -29,5 +29,9 @@ Zuguang Gu <z.gu@dkfz.de>
29 29
 \examples{
30 30
 
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+
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+
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+
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: d5adc92bdbf27b45a6a4b5c7e29d2e4fe8380194

allow reordering



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@107130 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 04/08/2015 20:24:37
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@@ -27,5 +27,7 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 
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 }
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 \examples{
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+
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 174dbdcbcad3be858d664784793f1b2424acc2c0

remove plot.HeatmapList and print.HeatmapList



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106530 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 18/07/2015 18:14:29
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@@ -27,6 +27,5 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 
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 }
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 \examples{
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-
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 4cbce102eabb1633fc8980b1374795bfb44507df

Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap


Commit id: a15bbec76c85c15bc27273ce15f5118ea087132f

refreshed documentatinos


Commit id: b1fe0a94aa09a4a47e5a02383ce662580f057bdc

ColorMapping object has default value for name slot



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106487 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 16/07/2015 15:21:23
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@@ -27,5 +27,6 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 
28 28
 }
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 \examples{
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff9ffa810ca9f16a253861d97301062962dbe38b

titles support expression now



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106147 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 21:26:16
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27 27
 
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 }
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 \examples{
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-
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-
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: e811f8100ef035ff75c16312b3e5112cc82d4a49

continuous legend is supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@106027 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 13/07/2015 10:21:55
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@@ -27,5 +27,7 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 
28 28
 }
29 29
 \examples{
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+
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+
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 # no example
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 NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 2786dac4ddaa97c69cc24e29e121ed1a1624cdf4

Merge branch 'master' of https://github.com/jokergoo/mheatmap


Commit id: a61c101325601aa0d4d3ba81e10c33d4a8b34c63

rows can be split if providing a clustering object



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105855 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 06/07/2015 22:31:19
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 }
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 \examples{
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-
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 # no example
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-NULL
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-
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-}
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+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 9d7fc297a370b44dd3bfb12696ed9eac33aed48a

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105365 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 10:24:06
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@@ -28,6 +28,7 @@ Zuguang Gu <z.gu@dkfz.de>
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 }
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 \examples{
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+
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 # no example
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 NULL
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Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1d5cea822fed8ed91d7ead49f520f719b3fecfd9

refreshed documentations



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105355 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 23/06/2015 08:33:59
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27 27
 
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 }
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 \examples{
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 # no example
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-NULL}
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+NULL
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+
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+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 1682e4aed696b8fa901530ebc6b9d67ad2a013ad

refresh documentations and NAMESPACE



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105345 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 21:57:04
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@@ -1,39 +1,31 @@
1 1
 \name{AdditiveUnit}
2 2
 \alias{AdditiveUnit}
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-Constructor method for AdditiveUnit class  
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+Constructor method for AdditiveUnit class
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 }
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 \description{
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-Constructor method for AdditiveUnit class  
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 }
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 \arguments{
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   \item{...}{arguments.}
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 }
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 \details{
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-This method is not used in the package.  
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 }
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 \value{
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 }
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 \author{
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34 27
 
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 }
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 \examples{
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 # no example
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-NULL
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-}
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+NULL}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: ff6ad79beeef75c709dc08588bb942ad86de9761

rotation for heatmap title supported



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105315 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 22/06/2015 15:09:06
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@@ -1,31 +1,39 @@
1 1
 \name{AdditiveUnit}
2 2
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+Constructor method for AdditiveUnit class  
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 }
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 \description{
8
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+Constructor method for AdditiveUnit class  
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 }
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+}
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   \item{...}{arguments.}
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 }
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 \details{
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 }
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 }
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-Zuguang Gu <z.gu@dkfz.de>
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+
27 34
 
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 }
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 \examples{
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 # no example
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-NULL}
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+NULL
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+}
Browse code

Commit made by the Bioconductor Git-SVN bridge.

Commit id: 6cf15a1b2514d9c86295206a55c9d5efadc00f70

check row orders



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@105276 bc3139a8-67e5-0310-9ffc-ced21a209358

z.gu authored on 21/06/2015 17:44:09
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@@ -1,39 +1,31 @@
1 1
 \name{AdditiveUnit}
2 2
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+Constructor method for AdditiveUnit class
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 }
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 }
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 }
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34 27
 
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 }
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 \examples{
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 # no example
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+NULL}
Browse code

add package to repository

ComplexHeatmap/ podkat/ RBM/


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@101658 bc3139a8-67e5-0310-9ffc-ced21a209358

s.arora authored on 31/03/2015 18:31:58
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1 1
new file mode 100644
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+}
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+}
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+
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+}
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+
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+\author{
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+Zuguang Gu <z.gu@dkfz.de>  
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+
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+
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+}
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+\examples{
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+NULL
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+}