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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:11:24
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.14.0
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+Version: 2.15.0
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 Date: 2022-10-15
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 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
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                   comment = c('ORCID'="0000-0002-7395-8709"))
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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:11:24
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.13.4
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+Version: 2.14.0
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 Date: 2022-10-15
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 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
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                   comment = c('ORCID'="0000-0002-7395-8709"))
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anno_barplot(): fixed a bug when besides = TRUE

Zuguang Gu authored on 27/10/2022 08:33:37
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.13.3
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+Version: 2.13.4
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 Date: 2022-10-15
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 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
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                   comment = c('ORCID'="0000-0002-7395-8709"))
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update version

Zuguang Gu authored on 15/10/2022 08:05:33
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.13.2
5
-Date: 2022-08-31
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+Version: 2.13.3
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+Date: 2022-10-15
6 6
 Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
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                   comment = c('ORCID'="0000-0002-7395-8709"))
8 8
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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anno_density(): fixed a bug in heatmap density

Zuguang Gu authored on 06/10/2022 08:26:08
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@@ -3,8 +3,8 @@ Type: Package
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 Title: Make Complex Heatmaps
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 Version: 2.13.2
5 5
 Date: 2022-08-31
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-Author: Zuguang Gu
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-Maintainer: Zuguang Gu <z.gu@dkfz.de>
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+Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
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+                  comment = c('ORCID'="0000-0002-7395-8709"))
8 8
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
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     RColorBrewer, GlobalOptions (>= 0.1.0), png,
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fixed a bug of annotation legens when 'df' is set

Zuguang Gu authored on 31/08/2022 14:37:52
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.13.1
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-Date: 2021-05-10
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+Version: 2.13.2
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+Date: 2022-08-31
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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merge with bioc

Zuguang Gu authored on 10/05/2022 09:18:56
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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:24:37
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 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.12.0
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+Version: 2.13.0
5 5
 Date: 2021-11-08
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:24:37
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.11.1
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+Version: 2.12.0
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 Date: 2021-11-08
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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reduce at and label for heatmap_legend_param according to col

Zuguang Gu authored on 12/04/2022 16:11:28
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.11.1
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+Version: 2.11.2
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 Date: 2021-11-08
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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fixed warnings

Zuguang Gu authored on 02/04/2022 19:28:24
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@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
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     RColorBrewer, GlobalOptions (>= 0.1.0), png,
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-    digest, IRanges, matrixStats, foreach, doParallel
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+    digest, IRanges, matrixStats, foreach, doParallel, codetools
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 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
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     dendextend (>= 1.0.1), grImport, grImport2, glue,
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add show_name in anno_empty()

Zuguang Gu authored on 03/02/2022 09:53:48
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@@ -6,7 +6,7 @@ Date: 2021-11-08
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9
-Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
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+Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue,
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     RColorBrewer, GlobalOptions (>= 0.1.0), png,
11 11
     digest, IRanges, matrixStats, foreach, doParallel
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
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version bump

Zuguang Gu authored on 08/11/2021 12:28:05
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.11.0
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-Date: 2021-10-17
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+Version: 2.11.1
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+Date: 2021-11-08
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:19:39
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.10.0
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+Version: 2.11.0
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 Date: 2021-10-17
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:19:39
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.9.4
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+Version: 2.10.0
5 5
 Date: 2021-10-17
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update

Zuguang Gu authored on 25/10/2021 10:18:45
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
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 Type: Package
3 3
 Title: Make Complex Heatmaps
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 Version: 2.9.4
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-Date: 2021-09-08
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+Date: 2021-10-17
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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update

Zuguang Gu authored on 08/09/2021 13:02:52
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.9.3
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-Date: 2021-08-02
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+Version: 2.9.4
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+Date: 2021-09-08
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
Zuguang Gu authored on 02/08/2021 11:10:18
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support GRangesList objects in make_comb_mat

Zuguang Gu authored on 02/08/2021 10:26:51
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@@ -8,12 +8,12 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), png,
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-    Cairo, digest, IRanges, matrixStats, foreach, doParallel
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+    digest, IRanges, matrixStats, foreach, doParallel
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
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     dendextend (>= 1.0.1), grImport, grImport2, glue,
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     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
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-    gridGraphics, gplots, rmarkdown
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+    gridGraphics, gplots, rmarkdown, Cairo
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 VignetteBuilder: knitr
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 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
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pheatmap do not call draw by default

Zuguang Gu authored on 22/07/2021 20:35:41
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.9.2
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-Date: 2021-07-13
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+Version: 2.9.3
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+Date: 2021-07-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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check dimension names of matrices and annotations

Zuguang Gu authored on 13/07/2021 15:43:05
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.9.1
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-Date: 2021-05-04
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+Version: 2.9.2
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+Date: 2021-07-13
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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add rmarkdown to Suggests

Zuguang Gu authored on 03/07/2021 08:17:56
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
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     jpeg, tiff, fastcluster, EnrichedHeatmap,
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     dendextend (>= 1.0.1), grImport, grImport2, glue,
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     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
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-    gridGraphics, gplots
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+    gridGraphics, gplots, rmarkdown
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 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
Browse code

use github action

Zuguang Gu authored on 01/07/2021 11:29:17
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 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.11
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+Version: 2.9.1
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 Date: 2021-05-04
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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-Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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+Depends: R (>= 3.5.0), methods, grid, graphics, stats, grDevices
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 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
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     RColorBrewer, GlobalOptions (>= 0.1.0), png,
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     Cairo, digest, IRanges, matrixStats, foreach, doParallel
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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:12:28
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.8.0
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+Version: 2.9.0
5 5
 Date: 2021-05-04
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:12:28
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.11
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+Version: 2.8.0
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 Date: 2021-05-04
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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version bump

Zuguang authored on 04/05/2021 13:55:58
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.10.9002
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-Date: 2021-4-14
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+Version: 2.7.11
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+Date: 2021-05-04
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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change -unit to -1*unit for compatible with grid3

Zuguang authored on 14/04/2021 14:04:10
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.10.9001
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-Date: 2021-4-6
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+Version: 2.7.10.9002
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+Date: 2021-4-14
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update

Zuguang authored on 06/04/2021 10:25:43
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.10.9000
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-Date: 2021-4-4
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+Version: 2.7.10.9001
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+Date: 2021-4-6
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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increase version number

Zuguang authored on 04/04/2021 13:30:00
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9
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-Date: 2021-3-28
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+Version: 2.7.10.9000
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+Date: 2021-4-4
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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submit to bioc

Zuguang authored on 04/04/2021 13:29:15
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1007
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+Version: 2.7.9
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 Date: 2021-3-28
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update

Zuguang authored on 28/03/2021 08:14:55
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1006
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-Date: 2021-3-25
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+Version: 2.7.9.1007
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+Date: 2021-3-28
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update docs

Zuguang authored on 25/03/2021 09:14:00
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1005
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-Date: 2021-3-24
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+Version: 2.7.9.1006
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+Date: 2021-3-25
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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rename rect3D to bar3D

Zuguang authored on 24/03/2021 20:15:32
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1004
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+Version: 2.7.9.1005
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 Date: 2021-3-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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add stat argument in frequencyHeatmap()

Zuguang authored on 24/03/2021 19:56:37
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1003
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+Version: 2.7.9.1004
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 Date: 2021-3-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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add Heatmap3d()

Zuguang authored on 24/03/2021 09:05:20
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1002
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-Date: 2021-3-23
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+Version: 2.7.9.1003
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+Date: 2021-3-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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fixed a bug of using do.call() for rowAnnotation()

Zuguang authored on 23/03/2021 09:09:02
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.9.1000
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-Date: 2021-3-18
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+Version: 2.7.9.1002
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+Date: 2021-3-23
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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version bump

Zuguang authored on 18/03/2021 15:12:38
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.8
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+Version: 2.7.9.1000
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 Date: 2021-3-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update on bioc

Zuguang authored on 18/03/2021 15:11:21
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.8.1000
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-Date: 2021-2-25
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+Version: 2.7.8
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+Date: 2021-3-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update

Zuguang Gu authored on 25/02/2021 14:04:04
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.7
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-Date: 2021-2-20
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+Version: 2.7.8.1000
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+Date: 2021-2-25
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update to bioc

Zuguang Gu authored on 21/02/2021 07:46:40
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.7.1002
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+Version: 2.7.7
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 Date: 2021-2-20
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

names in the vector are recovered in when alter_fun is defined as a single function

Zuguang Gu authored on 20/02/2021 09:02:50
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1 1
 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.7.1001
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-Date: 2021-2-18
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+Version: 2.7.7.1002
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+Date: 2021-2-20
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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reset the default of border_color

Zuguang Gu authored on 18/02/2021 21:23:04
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 Package: ComplexHeatmap
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 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.7.1000
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+Version: 2.7.7.1001
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 Date: 2021-2-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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proper defaults are updated

Zuguang Gu authored on 18/02/2021 20:53:00
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1010
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-Date: 2021-2-12
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+Version: 2.7.7.1000
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+Date: 2021-2-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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draw() stores legend-related configurations

Zuguang Gu authored on 12/02/2021 19:42:01
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1009
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-Date: 2021-2-9
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+Version: 2.7.6.1010
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+Date: 2021-2-12
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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update docs

Zuguang Gu authored on 09/02/2021 20:31:08
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 Package: ComplexHeatmap
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 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1008
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+Version: 2.7.6.1009
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 Date: 2021-2-9
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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number of split can be the same as number of matrix rows/columns

Zuguang Gu authored on 09/02/2021 20:14:10
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1007
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+Version: 2.7.6.1008
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 Date: 2021-2-9
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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adjust_dend_by_x(): simplified the representation of units

Zuguang Gu authored on 09/02/2021 19:57:24
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1005
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+Version: 2.7.6.1007
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 Date: 2021-2-9
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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expression is properly processed for discrete legends

Zuguang Gu authored on 09/02/2021 13:53:11
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1004
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-Date: 2021-1-27
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+Version: 2.7.6.1005
5
+Date: 2021-2-9
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10
-    RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    Cairo, digest, IRanges, matrixStats
10
+    RColorBrewer, GlobalOptions (>= 0.1.0), png,
11
+    Cairo, digest, IRanges, matrixStats, foreach, doParallel
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
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fixed grid.grabExpr won't return to current device

Zuguang Gu authored on 27/01/2021 20:10:19
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1003
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-Date: 2021-1-26
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+Version: 2.7.6.1004
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+Date: 2021-1-27
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

remove zoom argument from anno_empty()

Zuguang Gu authored on 26/01/2021 16:10:51
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1002
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-Date: 2021-1-24
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+Version: 2.7.6.1003
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+Date: 2021-1-26
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

update

Zuguang Gu authored on 24/01/2021 16:38:11
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.6.1001
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+Version: 2.7.6.1002
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 Date: 2021-1-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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update docs

Zuguang Gu authored on 24/01/2021 16:37:47
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.6.1000
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+Version: 2.7.6.1001
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 Date: 2021-1-24
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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support to directly use grob in Legend()

Zuguang Gu authored on 24/01/2021 08:39:14
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.5
5
-Date: 2021-1-22
4
+Version: 2.7.6.1000
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+Date: 2021-1-24
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 22/01/2021 14:20:05
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.5.1001
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+Version: 2.7.5
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 Date: 2021-1-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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support kmeans_k in pheatmap()

Zuguang Gu authored on 22/01/2021 10:25:28
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.5.1000
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+Version: 2.7.5.1001
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 Date: 2021-1-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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anno_block(): add labels_offset and labels_just argument

Zuguang Gu authored on 22/01/2021 09:39:05
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.4
5
-Date: 2020-12-31
4
+Version: 2.7.5.1000
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+Date: 2021-1-22
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 31/12/2020 09:03:07
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 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.4.1000
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+Version: 2.7.4
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 Date: 2020-12-31
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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add save_last option

Zuguang Gu authored on 31/12/2020 09:02:28
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.3
5
-Date: 2020-12-21
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+Version: 2.7.4.1000
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+Date: 2020-12-31
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 21/12/2020 16:37:32
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.3
5 5
 Date: 2020-12-21
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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move heatmap() as a private function

Zuguang Gu authored on 21/12/2020 16:03:30
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.2
5
-Date: 2020-12-18
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+Version: 2.7.2.1000
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+Date: 2020-12-21
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add post_fun to draw

Zuguang Gu authored on 18/12/2020 07:47:08
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.2
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 Date: 2020-12-18
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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draw() also allows post_fun

Zuguang Gu authored on 18/12/2020 07:17:49
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.2
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-Date: 2020-12-17
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+Version: 2.7.2.1000
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+Date: 2020-12-18
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 17/12/2020 21:04:55
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.2.1000
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+Version: 2.7.2
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 Date: 2020-12-17
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

versio bump

Zuguang Gu authored on 17/12/2020 21:04:03
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1016
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+Version: 2.7.2.1000
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 Date: 2020-12-17
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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change cex to fontsize

Zuguang Gu authored on 17/12/2020 09:02:57
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1015
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-Date: 2020-12-15
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+Version: 2.7.1.1016
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+Date: 2020-12-17
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add a mark for UpSet

Zuguang Gu authored on 15/12/2020 12:39:08
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1014
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+Version: 2.7.1.1015
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 Date: 2020-12-15
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

won't generate color matrix when type=='none'

Zuguang Gu authored on 15/12/2020 12:03:14
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1013
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+Version: 2.7.1.1014
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 Date: 2020-12-15
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 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

won't generate color matrix when type=='none'

Zuguang Gu authored on 15/12/2020 12:01:39
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1012
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-Date: 2020-12-14
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+Version: 2.7.1.1013
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+Date: 2020-12-15
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

move code for interactive heatmap to InteractiveComplexHeatmap package

Zuguang Gu authored on 14/12/2020 08:38:56
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1011
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-Date: 2020-12-13
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+Version: 2.7.1.1012
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+Date: 2020-12-14
6 6
 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16
-    shiny, S4Vectors (>= 0.26.1), gridGraphics, gplots
16
+    gridGraphics, gplots
17 17
 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
Browse code

translate stats::heatmap() and gplots::heatmap.2()

Zuguang Gu authored on 13/12/2020 20:54:51
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1010
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-Date: 2020-12-8
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+Version: 2.7.1.1011
5
+Date: 2020-12-13
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16
-    shiny, S4Vectors (>= 0.26.1)
16
+    shiny, S4Vectors (>= 0.26.1), gridGraphics, gplots
17 17
 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
... ...
@@ -21,4 +21,4 @@ Description: Complex heatmaps are efficient to visualize associations
21 21
     multiple heatmaps and supports various annotation graphics.
22 22
 biocViews: Software, Visualization, Sequencing
23 23
 URL: https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
24
-License: MIT + file LICENSE
25 24
\ No newline at end of file
25
+License: MIT + file LICENSE
Browse code

selectPosition()/selectArea() works well on Rstudio desktop

Zuguang Gu authored on 08/12/2020 20:47:42
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1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1009
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-Date: 2020-12-1
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+Version: 2.7.1.1010
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+Date: 2020-12-8
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

pheatmap(): change heatmap name to ' ' to turn off legend title by default

Zuguang Gu authored on 01/12/2020 16:03:08
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
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-Version: 2.7.1.1008
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-Date: 2020-11-27
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+Version: 2.7.1.1009
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+Date: 2020-12-1
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

col can be set as NULL in Heatmap()

Zuguang Gu authored on 27/11/2020 09:57:23
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1007
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-Date: 2020-11-25
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+Version: 2.7.1.1008
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+Date: 2020-11-27
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

consider when dimnames() is NULL

Zuguang Gu authored on 25/11/2020 19:39:32
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.7.1.1006
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+Version: 2.7.1.1007
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 Date: 2020-11-25
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 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

move S4vector to suggests

Zuguang Gu authored on 25/11/2020 14:04:09
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@@ -1,19 +1,19 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1005
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-Date: 2020-11-24
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+Version: 2.7.1.1006
5
+Date: 2020-11-25
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    Cairo, digest, S4Vectors (>= 0.26.1), IRanges, matrixStats
11
+    Cairo, digest, IRanges, matrixStats
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16
-    shiny
16
+    shiny, S4Vectors (>= 0.26.1)
17 17
 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
Browse code

print message if directly setting anno_*() for 'top_annotation' argument

Zuguang Gu authored on 24/11/2020 08:23:47
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1004
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-Date: 2020-11-23
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+Version: 2.7.1.1005
5
+Date: 2020-11-24
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

fixed the docs

Zuguang Gu authored on 23/11/2020 08:39:38
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1003
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-Date: 2020-11-22
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+Version: 2.7.1.1004
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+Date: 2020-11-23
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
... ...
@@ -10,7 +10,7 @@ Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11 11
     Cairo, digest, S4Vectors (>= 0.26.1), IRanges, matrixStats
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13
-    jpeg, tiff, fastcluster,
13
+    jpeg, tiff, fastcluster, EnrichedHeatmap,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 16
     shiny
Browse code

add functions to deal with genome-scale heatmaps

Zuguang Gu authored on 22/11/2020 20:41:16
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1002
5
-Date: 2020-10-22
4
+Version: 2.7.1.1003
5
+Date: 2020-11-22
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add functions to deal with genome-scale heatmaps

Zuguang Gu authored on 22/11/2020 20:40:54
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1.1001
4
+Version: 2.7.1.1002
5 5
 Date: 2020-10-22
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

add functions to deal with genome-scale heatmaps

Zuguang Gu authored on 22/11/2020 20:40:20
Showing1 changed files
... ...
@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.1
5
-Date: 2020-10-13
4
+Version: 2.7.1.1001
5
+Date: 2020-10-22
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
... ...
@@ -21,4 +21,4 @@ Description: Complex heatmaps are efficient to visualize associations
21 21
     multiple heatmaps and supports various annotation graphics.
22 22
 biocViews: Software, Visualization, Sequencing
23 23
 URL: https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
24
-License: MIT + file LICENSE
24
+License: MIT + file LICENSE
25 25
\ No newline at end of file
Browse code

finally adjust the space of column title according to ggplot2

Zuguang Gu authored on 30/10/2020 15:10:21
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.7.0
4
+Version: 2.7.1
5 5
 Date: 2020-10-13
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:04:03
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.6.0
4
+Version: 2.7.0
5 5
 Date: 2020-10-13
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:04:03
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.6
4
+Version: 2.6.0
5 5
 Date: 2020-10-13
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

change default raster device to CairoPNG

Zuguang Gu authored on 20/10/2020 13:15:35
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@@ -8,9 +8,9 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors (>= 0.26.1), IRanges, matrixStats
11
+    Cairo, digest, S4Vectors (>= 0.26.1), IRanges, matrixStats
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13
-    Cairo, jpeg, tiff, fastcluster,
13
+    jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16 16
     shiny
Browse code

version bump

Zuguang Gu authored on 13/10/2020 17:25:45
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.5
5
-Date: 2020-06-26
4
+Version: 2.5.6
5
+Date: 2020-10-13
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

remove dependency of ragg

Zuguang Gu authored on 11/10/2020 18:24:04
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16
-    shiny, ragg
16
+    shiny
17 17
 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
Browse code

support agg_png for writing temporary png files

Zuguang Gu authored on 09/10/2020 13:12:56
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@@ -13,7 +13,7 @@ Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort,
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
15 15
     GenomicRanges, gridtext, pheatmap (>= 1.0.12),
16
-    shiny
16
+    shiny, ragg
17 17
 VignetteBuilder: knitr
18 18
 Description: Complex heatmaps are efficient to visualize associations 
19 19
     between different sources of data sets and reveal potential patterns. 
Zuguang Gu authored on 09/09/2020 06:54:53
Showing0 changed files
Browse code

check NA in pheatmap()

Zuguang Gu authored on 09/09/2020 06:54:18
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... ...
@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors, IRanges
11
+    digest, S4Vectors, IRanges, matrixStats
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

Update DESCRIPTION

Zuguang Gu authored on 19/08/2020 20:58:20 • GitHub committed on 19/08/2020 20:58:20
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@@ -5,7 +5,6 @@ Version: 2.5.5
5 5
 Date: 2020-06-26
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8
-biocViews:
9 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
10 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
11 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
... ...
@@ -22,4 +21,4 @@ Description: Complex heatmaps are efficient to visualize associations
22 21
     multiple heatmaps and supports various annotation graphics.
23 22
 biocViews: Software, Visualization, Sequencing
24 23
 URL: https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
25
-License: MIT + file LICENSE
26 24
\ No newline at end of file
25
+License: MIT + file LICENSE
Browse code

fix with (>= 0.26.1)

evanbiederstedt authored on 19/08/2020 17:31:12
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@@ -5,10 +5,11 @@ Version: 2.5.5
5 5
 Date: 2020-06-26
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8
+biocViews:
8 9
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 10
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 11
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors (>=0.27.12), IRanges
12
+    digest, S4Vectors (>= 0.26.1), IRanges
12 13
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 14
     Cairo, jpeg, tiff, fastcluster,
14 15
     dendextend (>= 1.0.1), grImport, grImport2, glue,
... ...
@@ -21,4 +22,4 @@ Description: Complex heatmaps are efficient to visualize associations
21 22
     multiple heatmaps and supports various annotation graphics.
22 23
 biocViews: Software, Visualization, Sequencing
23 24
 URL: https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
24
-License: MIT + file LICENSE
25
+License: MIT + file LICENSE
25 26
\ No newline at end of file
Browse code

try 0.27.12

evanbiederstedt authored on 19/08/2020 17:25:03
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... ...
@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors, IRanges
11
+    digest, S4Vectors (>=0.27.12), IRanges
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
evanbiederstedt authored on 19/08/2020 17:21:45
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... ...
@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors (>=0.26.1), IRanges
11
+    digest, S4Vectors, IRanges
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

version S4vector

evanbiederstedt authored on 18/08/2020 16:23:36
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@@ -8,7 +8,7 @@ Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10 10
     RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
-    digest, S4Vectors, IRanges
11
+    digest, S4Vectors (>=0.26.1), IRanges
12 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
13 13
     Cairo, jpeg, tiff, fastcluster,
14 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

version bump

Zuguang Gu authored on 12/08/2020 14:38:30
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.4
4
+Version: 2.5.5
5 5
 Date: 2020-06-26
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bug fixed

Zuguang Gu authored on 28/06/2020 13:14:25
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.3
5
-Date: 2020-05-17
4
+Version: 2.5.4
5
+Date: 2020-06-26
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

export heatmaps as a shiny app

Zuguang Gu authored on 17/05/2020 13:20:00
Showing1 changed files
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@@ -2,12 +2,13 @@ Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4 4
 Version: 2.5.3
5
-Date: 2020-05-14
5
+Date: 2020-05-17
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
9 9
 Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
10
-    RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png
10
+    RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png,
11
+    digest, S4Vectors, IRanges
11 12
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
12 13
     Cairo, jpeg, tiff, fastcluster,
13 14
     dendextend (>= 1.0.1), grImport, grImport2, glue,
Browse code

add selectArea()

Zuguang Gu authored on 14/05/2020 06:36:17
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.2
5
-Date: 2020-05-06
4
+Version: 2.5.3
5
+Date: 2020-05-14
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
... ...
@@ -11,7 +11,8 @@ Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
11 11
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
12 12
     Cairo, jpeg, tiff, fastcluster,
13 13
     dendextend (>= 1.0.1), grImport, grImport2, glue,
14
-    GenomicRanges, gridtext, pheatmap (>= 1.0.12)
14
+    GenomicRanges, gridtext, pheatmap (>= 1.0.12),
15
+    shiny
15 16
 VignetteBuilder: knitr
16 17
 Description: Complex heatmaps are efficient to visualize associations 
17 18
     between different sources of data sets and reveal potential patterns. 
Browse code

increase version number

Zuguang Gu authored on 06/05/2020 09:54:55
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.1
4
+Version: 2.5.2
5 5
 Date: 2020-05-06
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

translate pheatmap to Heatmap

Zuguang Gu authored on 06/05/2020 07:21:34
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4 4
 Version: 2.5.1
5
-Date: 2020-04-29
5
+Date: 2020-05-06
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
... ...
@@ -11,7 +11,7 @@ Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
11 11
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
12 12
     Cairo, jpeg, tiff, fastcluster,
13 13
     dendextend (>= 1.0.1), grImport, grImport2, glue,
14
-    GenomicRanges, gridtext
14
+    GenomicRanges, gridtext, pheatmap (>= 1.0.12)
15 15
 VignetteBuilder: knitr
16 16
 Description: Complex heatmaps are efficient to visualize associations 
17 17
     between different sources of data sets and reveal potential patterns. 
Browse code

update

Zuguang Gu authored on 29/04/2020 07:30:53
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.5.0
5
-Date: 2020-04-24
4
+Version: 2.5.1
5
+Date: 2020-04-29
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:47:53
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.4.0
4
+Version: 2.5.0
5 5
 Date: 2020-04-24
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:47:53
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@@ -1,7 +1,7 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.3.5
4
+Version: 2.4.0
5 5
 Date: 2020-04-24
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
Browse code

increase version number

Zuguang Gu authored on 24/04/2020 16:54:43
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.3.4
5
-Date: 2020-04-13
4
+Version: 2.3.5
5
+Date: 2020-04-24
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

updat docs

Zuguang Gu authored on 13/04/2020 12:17:38
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4 4
 Version: 2.3.4
5
-Date: 2020-04-03
5
+Date: 2020-04-13
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

add 'alter_graphic()' function to automatically generate alteration graphic functions

Zuguang Gu authored on 03/04/2020 19:56:52
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4 4
 Version: 2.3.4
5
-Date: 2020-04-02
5
+Date: 2020-04-03
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

version bump

Zuguang Gu authored on 02/04/2020 13:45:02
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.3.3
5
-Date: 2020-03-21
4
+Version: 2.3.4
5
+Date: 2020-04-02
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

support gridtext

Zuguang Gu authored on 21/03/2020 14:32:08
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@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.3.2
5
-Date: 2020-03-05
4
+Version: 2.3.3
5
+Date: 2020-03-21
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

use unitType(, recurse=T) to test absolute units

Zuguang Gu authored on 05/03/2020 21:39:57
Showing1 changed files
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4 4
 Version: 2.3.2
5
-Date: 2020-02-05
5
+Date: 2020-03-05
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
8 8
 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

anno_simple(): fixed a bug when all pch are NA in a slice

Zuguang Gu authored on 25/02/2020 14:51:37
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@@ -11,7 +11,7 @@ Imports: circlize (>= 0.4.5), GetoptLong, colorspace, clue,
11 11
 Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, 
12 12
     Cairo, jpeg, tiff, fastcluster,
13 13
     dendextend (>= 1.0.1), grImport, grImport2, glue,
14
-    GenomicRanges
14
+    GenomicRanges, gridtext
15 15
 VignetteBuilder: knitr
16 16
 Description: Complex heatmaps are efficient to visualize associations 
17 17
     between different sources of data sets and reveal potential patterns. 
Browse code

support gridtext

Zuguang Gu authored on 05/02/2020 07:34:10
Showing1 changed files
... ...
@@ -1,8 +1,8 @@
1 1
 Package: ComplexHeatmap
2 2
 Type: Package
3 3
 Title: Make Complex Heatmaps
4
-Version: 2.3.1
5
-Date: 2019-10-22
4
+Version: 2.3.2
5
+Date: 2020-02-05
6 6
 Author: Zuguang Gu
7 7
 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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add HEATMAP_LEGEND_PADDING and ANNOTATION_LEGEND_PADDING options

Zuguang Gu authored on 09/11/2019 09:18:39
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.1.2
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+Version: 2.3.1
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 Date: 2019-10-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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version bump

Zuguang Gu authored on 22/10/2019 10:04:32
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.1.1
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-Date: 2019-10-12
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+Version: 2.1.2
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+Date: 2019-10-22
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

heatmap name cannot be empty string

Zuguang Gu authored on 12/10/2019 10:01:00
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 Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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-Version: 2.1.0
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-Date: 2019-07-02
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+Version: 2.1.1
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+Date: 2019-10-12
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
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add labels_rot argument to anno_mark()

Zuguang Gu authored on 02/07/2019 20:34:44
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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 Version: 2.1.0
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-Date: 2019-05-03
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+Date: 2019-07-02
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Zuguang Gu authored on 08/05/2019 19:52:39
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add show_quantiles argument

Zuguang Gu authored on 08/05/2019 11:24:33
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@@ -2,7 +2,7 @@ Package: ComplexHeatmap
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 Type: Package
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 Title: Make Complex Heatmaps
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 Version: 1.99.8
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-Date: 2019-04-28
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+Date: 2019-05-03
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 Author: Zuguang Gu
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 Maintainer: Zuguang Gu <z.gu@dkfz.de>
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 Depends: R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Browse code

bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:12:31
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