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adjust documentations

Zuguang Gu authored on 18/12/2020 13:08:51
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@@ -101,14 +101,7 @@ There are following blog posts focusing on specific topics:
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 ### UpSet plot
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-![](https://pbs.twimg.com/media/Dvpp31uX4AAqGDP.jpg)
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-
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-### Interactive heatmaps
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-
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-Heatmaps can be exported into a Shiny app by `ht_shiny(ht)`. See examples at https://jokergoo.shinyapps.io/interactive_complexheatmap/.
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-
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-<img src="https://user-images.githubusercontent.com/449218/82199376-e5eec600-98fd-11ea-9fca-ad95d405dc20.gif" />
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-
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+<img src="https://user-images.githubusercontent.com/449218/102615477-48c76a80-4136-11eb-98d9-3c528844fbe8.png" width=700 />
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 ## License
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@@ -1,6 +1,6 @@
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 \name{[.AnnotationFunction}
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-\alias{[.AnnotationFunction}
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 \alias{Extract.AnnotationFunction}
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+\alias{[.AnnotationFunction}
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 \title{
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 Subset an AnnotationFunction Object
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 }
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@@ -1,6 +1,6 @@
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 \name{[.Heatmap}
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-\alias{[.Heatmap}
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 \alias{Extract.Heatmap}
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+\alias{[.Heatmap}
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 \title{
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 Subset a Heatmap
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 }
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@@ -1,6 +1,6 @@
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 \name{[.HeatmapAnnotation}
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-\alias{[.HeatmapAnnotation}
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 \alias{Extract.HeatmapAnnotation}
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+\alias{[.HeatmapAnnotation}
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 \title{
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 Subset the HeatmapAnnotation object
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 }
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@@ -1,6 +1,6 @@
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 \name{[.HeatmapList}
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-\alias{[.HeatmapList}
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 \alias{Extract.HeatmapList}
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+\alias{[.HeatmapList}
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 \title{
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 Subset a HeatmapList object
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 }
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@@ -1,6 +1,6 @@
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 \name{[.SingleAnnotation}
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-\alias{[.SingleAnnotation}
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 \alias{Extract.SingleAnnotation}
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+\alias{[.SingleAnnotation}
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 \title{
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 Subset an SingleAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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 \name{[.comb_mat}
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-\alias{[.comb_mat}
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 \alias{Extract.comb_mat}
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+\alias{[.comb_mat}
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 \title{
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 Subset the Combination Matrix
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 }
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@@ -1,6 +1,6 @@
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 \name{[.gridtext}
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-\alias{[.gridtext}
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 \alias{Extract.gridtext}
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+\alias{[.gridtext}
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 \title{
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 Subset method of gridtext class
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 }
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@@ -1,6 +1,6 @@
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 \name{+.AdditiveUnit}
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-\alias{+.AdditiveUnit}
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 \alias{add.AdditiveUnit}
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+\alias{+.AdditiveUnit}
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 \title{
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 Horizontally Add Heatmaps or Annotations to a Heatmap List
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 }
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@@ -1,6 +1,6 @@
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-\name{height<-.AnnotationFunction}
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-\alias{height<-.AnnotationFunction}
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+\name{heightAssign.AnnotationFunction}
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 \alias{heightAssign.AnnotationFunction}
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+\alias{height<-.AnnotationFunction}
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 \title{
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 Assign the Height to the AnnotationFunction Object
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 }
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@@ -1,6 +1,6 @@
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-\name{height<-.HeatmapAnnotation}
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-\alias{height<-.HeatmapAnnotation}
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+\name{heightAssign.HeatmapAnnotation}
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 \alias{heightAssign.HeatmapAnnotation}
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+\alias{height<-.HeatmapAnnotation}
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 \title{
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 Assign the Height to the HeatmapAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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-\name{height<-.SingleAnnotation}
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-\alias{height<-.SingleAnnotation}
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+\name{heightAssign.SingleAnnotation}
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 \alias{heightAssign.SingleAnnotation}
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+\alias{height<-.SingleAnnotation}
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 \title{
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 Assign the Height to the SingleAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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-\name{names<-.HeatmapAnnotation}
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-\alias{names<-.HeatmapAnnotation}
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+\name{namesAssign.HeatmapAnnotation}
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 \alias{namesAssign.HeatmapAnnotation}
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+\alias{names<-.HeatmapAnnotation}
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 \title{
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 Assign Annotation Names
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 }
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@@ -1,6 +1,6 @@
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 \name{\%v\%}
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-\alias{\%v\%}
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 \alias{pct_v_pct}
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+\alias{\%v\%}
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 \title{
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 Vertically Add Heatmaps or Annotations to a Heatmap List
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 }
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@@ -1,6 +1,6 @@
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-\name{set_name<-}
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-\alias{set_name<-}
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+\name{set_nameAssign}
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 \alias{set_nameAssign}
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+\alias{set_name<-}
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 \title{
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 Modify Set Names
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 }
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@@ -1,6 +1,6 @@
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-\name{size<-.AnnotationFunction}
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-\alias{size<-.AnnotationFunction}
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+\name{sizeAssign.AnnotationFunction}
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 \alias{sizeAssign.AnnotationFunction}
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+\alias{size<-.AnnotationFunction}
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 \title{
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 Assign the Size to the AnnotationFunction Object
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 }
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@@ -1,6 +1,6 @@
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-\name{size<-.HeatmapAnnotation}
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-\alias{size<-.HeatmapAnnotation}
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+\name{sizeAssign.HeatmapAnnotation}
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 \alias{sizeAssign.HeatmapAnnotation}
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+\alias{size<-.HeatmapAnnotation}
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 \title{
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 Assign the Size to the HeatmapAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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-\name{size<-.SingleAnnotation}
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-\alias{size<-.SingleAnnotation}
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+\name{sizeAssign.SingleAnnotation}
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 \alias{sizeAssign.SingleAnnotation}
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+\alias{size<-.SingleAnnotation}
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 \title{
5 5
 Assign the Size to the SingleAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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-\name{width<-.AnnotationFunction}
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-\alias{width<-.AnnotationFunction}
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+\name{widthAssign.AnnotationFunction}
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 \alias{widthAssign.AnnotationFunction}
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+\alias{width<-.AnnotationFunction}
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 \title{
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 Assign the Width to the AnnotationFunction Object
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 }
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@@ -1,6 +1,6 @@
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-\name{width<-.HeatmapAnnotation}
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-\alias{width<-.HeatmapAnnotation}
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+\name{widthAssign.HeatmapAnnotation}
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 \alias{widthAssign.HeatmapAnnotation}
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+\alias{width<-.HeatmapAnnotation}
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 \title{
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 Assign the Width to the HeatmapAnnotation Object
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 }
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@@ -1,6 +1,6 @@
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-\name{width<-.SingleAnnotation}
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-\alias{width<-.SingleAnnotation}
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+\name{widthAssign.SingleAnnotation}
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 \alias{widthAssign.SingleAnnotation}
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+\alias{width<-.SingleAnnotation}
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 \title{
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 Assign the Width to the SingleAnnotation Object
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 }