@@ -154,7 +154,7 @@ setMethod(f = "add_heatmap",

     ht_name = names(object@ht_list)

     which_duplicated = duplicated(ht_name)

     if(any(which_duplicated)) {

-        warning(paste0("Heatmap/row annotaiton names are duplicated: ", paste(ht_name[which_duplicated], collapse = ", ")))

+        warning(paste0("Heatmap/row annotation names are duplicated: ", paste(ht_name[which_duplicated], collapse = ", ")))

     }

     l = which(sapply(object@ht_list, inherits, "Heatmap"))

@@ -1050,7 +1050,7 @@ column_anno_text = function(...) {

 # == param

 # -at numeric index in the original matrix

 # -labels corresponding labels

-# -which column annotaiton or row annotation

+# -which column annotation or row annotation

 # -side side of the labels. If it is a column annotation, permitted values are "top" and "bottom";

 #       If it is a row annotation, permitted values are "left" and "right".

 # -lines_gp graphic settings for the segments

@@ -400,7 +400,7 @@ unify_mat_list = function(mat_list, default = 0) {

 # == title

-# Column barplot annotaiton for oncoPrint

+# Column barplot annotation for oncoPrint

 #

 # == details

 # This function is only used for column annotation

@@ -14,7 +14,7 @@ anno_link(at, labels, which = c("column", "row"), side = ifelse(which == "column

   \item{at}{numeric index in the original matrix}

   \item{labels}{corresponding labels}

-  \item{which}{column annotaiton or row annotation}

+  \item{which}{column annotation or row annotation}

   \item{side}{side of the labels. If it is a column annotation, permitted values are "top" and "bottom"; If it is a row annotation, permitted values are "left" and "right".}

   \item{lines_gp}{graphic settings for the segments}

   \item{labels_gp}{graphic settings for the labels}

@@ -1,10 +1,10 @@

 \name{anno_oncoprint_barplot}

 \alias{anno_oncoprint_barplot}

 \title{

-Column barplot annotaiton for oncoPrint

+Column barplot annotation for oncoPrint

 }

 \description{

-Column barplot annotaiton for oncoPrint

+Column barplot annotation for oncoPrint

 }

 \usage{

 anno_oncoprint_barplot()

@@ -13,7 +13,7 @@ Draw the single annotation

   \item{object}{a \code{\link{SingleAnnotation-class}} object.}

   \item{index}{a vector of orders}

-  \item{k}{if row annotation is splitted, the value identifies which row slice. It is only used for the naems of the viewport which contains the annotation graphics.}

+  \item{k}{if row annotation is splitted, the value identifies which row slice. It is only used for the names of the viewport which contains the annotation graphics.}

   \item{n}{total number of row slices}

 }

@@ -6,7 +6,7 @@ draw(anno, c(1, 4, 3, 5, 2))

 dev.off()

 test_that("discrete color mapping", {

-	expect_that(show(anno), prints_text("An annotaiton with discrete color mapping"))

+	expect_that(show(anno), prints_text("An annotation with discrete color mapping"))

 })

 pdf(NULL)

@@ -19,7 +19,7 @@ draw(anno, 1:10)

 dev.off()

 test_that("continuous color mapping", {

-	expect_that(show(anno), prints_text("An annotaiton with continuous color mapping"))

+	expect_that(show(anno), prints_text("An annotation with continuous color mapping"))

 })

 pdf(NULL)