Browse code

update

Zuguang Gu authored on 17/10/2018 06:09:36
Showing126 changed files

... ...
@@ -149,7 +149,7 @@ export("height<-")
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 export("ht_global_opt")
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 export("ht_opt")
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 export("is_abs_unit")
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-export("list_component")
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+export("list_components")
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 export("max_text_height")
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 export("max_text_width")
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 export("merge_dendrogram")
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@@ -405,13 +405,16 @@ anno_oncoprint_barplot = function(type = all_type, which = c("column", "row"),
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 	if(which == "column") {
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 		count = apply(arr, c(2, 3), sum)
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-		anno_barplot(count, gp = gpar(fill = col, col = NA), which = "column",
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+		fun = anno_barplot(count, gp = gpar(fill = col, col = NA), which = "column",
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 			baseline = 0, height = anno_size$height, border = border, ...)
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 	} else {
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 		count = apply(arr, c(1, 3), sum)
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-		anno_barplot(count, gp = gpar(fill = col, col = NA), which = "row",
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+		fun = anno_barplot(count, gp = gpar(fill = col, col = NA), which = "row",
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 			baseline = 0, width = anno_size$width, border = border, ...)
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 	}
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+	
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+	fun@show_name = FALSE
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+	return(fun)
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 }
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 guess_alter_fun_is_vectorized = function(alter_fun) {
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@@ -289,7 +289,7 @@ rep.list = function(x, n) {
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 # == value
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 # A vector of viewport names.
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 #
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-list_component = function() {
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+list_components = function() {
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     vp = grid.ls(viewports = TRUE, grobs = FALSE, flatten = FALSE, print = FALSE)
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     vp = unlist(vp)
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     attributes(vp) = NULL
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@@ -15,5 +15,4 @@ method so that above three classes can be appended to each other.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -23,5 +23,4 @@ See \code{\link{AnnotationFunction}} constructor for details.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -121,5 +121,4 @@ ComplexHeatmap Complete Reference ().
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -36,5 +36,4 @@ You can refer to the ComplexHeatmap Complete Reference for all the information o
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -23,5 +23,4 @@ If the heatmap list is horizontal, \code{i} is the real row indices and \code{j}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -30,5 +30,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -185,5 +185,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -25,5 +25,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -74,5 +74,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -27,5 +27,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -28,5 +28,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -40,5 +40,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -28,5 +28,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -28,5 +28,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -28,5 +28,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{adjust_heatmap_list-HeatmapList-method}
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 \alias{adjust_heatmap_list,HeatmapList-method}
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-\alias{adjust_heatmap_list}
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 \title{
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 Adjust heatmap list
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 }
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@@ -23,8 +22,8 @@ This function is only for internal use.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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 }
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+\alias{adjust_heatmap_list}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -20,5 +20,4 @@ anno_link(...)
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -29,5 +29,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ A \code{\link[grid]{grob}} object.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{annotation_legend_size-HeatmapList-method}
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 \alias{annotation_legend_size,HeatmapList-method}
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-\alias{annotation_legend_size}
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 \title{
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 Size of the annotation legend viewport
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 }
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@@ -29,8 +28,8 @@ A \code{\link[grid]{unit}} object.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{annotation_legend_size}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{color_mapping_legend-ColorMapping-method}
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 \alias{color_mapping_legend,ColorMapping-method}
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-\alias{color_mapping_legend}
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 \title{
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 Draw Legend Based on Color Mapping
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 }
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@@ -66,8 +65,8 @@ A \code{\link{Legends-class}} object.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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 }
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+\alias{color_mapping_legend}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -29,5 +29,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -31,5 +31,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -24,5 +24,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -30,5 +30,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -27,5 +27,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -26,5 +26,4 @@ The environment is at \code{object@var_env}.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -21,5 +21,4 @@ it calls \code{\link{copy_all,AnnotationFunction-method}} to hard copy the varia
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 \examples{
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 # There is no example
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 NULL
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-
25 24
 }
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@@ -17,5 +17,4 @@ dend_heights(x)
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -28,5 +28,4 @@ A \code{\link{grob}} object which is generally contructed by \code{\link[grid]{s
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Dimension of the Heatmap
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -29,5 +29,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -27,5 +27,4 @@ which is generally for testing purpose.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -33,5 +33,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -29,5 +29,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -174,5 +174,4 @@ Zuguang Gu <z.gu@dkfz.de>
174 174
 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -27,5 +27,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_annotation-Heatmap-method}
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 \alias{draw_annotation,Heatmap-method}
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-\alias{draw_annotation}
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 \title{
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 Draw Heatmap Annotations on the Heatmap
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 }
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@@ -31,8 +30,8 @@ This function returns no value.
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 \author{
32 31
 Zuguang Gu <z.gu@dkfz.de>
33 32
 }
33
+\alias{draw_annotation}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_annotation_legend-HeatmapList-method}
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 \alias{draw_annotation_legend,HeatmapList-method}
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-\alias{draw_annotation_legend}
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 \title{
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 Draw legends for all column annotations
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 }
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@@ -28,8 +27,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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 }
30
+\alias{draw_annotation_legend}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_dend-Heatmap-method}
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 \alias{draw_dend,Heatmap-method}
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-\alias{draw_dend}
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 \title{
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 Draw Heatmap Dendrograms
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 }
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@@ -34,8 +33,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
36 35
 }
36
+\alias{draw_dend}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_dimnames-Heatmap-method}
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 \alias{draw_dimnames,Heatmap-method}
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-\alias{draw_dimnames}
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 \title{
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 Draw row names or column names
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 }
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@@ -30,8 +29,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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 }
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+\alias{draw_dimnames}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_heatmap_body-Heatmap-method}
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 \alias{draw_heatmap_body,Heatmap-method}
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-\alias{draw_heatmap_body}
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 \title{
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 Draw the Heatmap Body
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 }
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@@ -29,8 +28,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{draw_heatmap_body}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_heatmap_legend-HeatmapList-method}
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 \alias{draw_heatmap_legend,HeatmapList-method}
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-\alias{draw_heatmap_legend}
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 \title{
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 Draw legends for all heatmaps
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 }
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@@ -28,8 +27,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
30 29
 }
30
+\alias{draw_heatmap_legend}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{draw_heatmap_list-HeatmapList-method}
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 \alias{draw_heatmap_list,HeatmapList-method}
3
-\alias{draw_heatmap_list}
4 3
 \title{
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 Draw the list of heatmaps
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 }
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@@ -26,8 +25,8 @@ This function returns no value.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
28 27
 }
28
+\alias{draw_heatmap_list}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -32,5 +32,4 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -30,5 +30,4 @@ Zuguang Gu <z.gu@dkfz.de>
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{get_color_mapping_list-HeatmapAnnotation-method}
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 \alias{get_color_mapping_list,HeatmapAnnotation-method}
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-\alias{get_color_mapping_list}
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 \title{
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 Get a List of ColorMapping objects
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 }
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@@ -26,8 +25,8 @@ A list of \code{\link{ColorMapping-class}} objects or an empty list.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
28 27
 }
28
+\alias{get_color_mapping_list}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{get_legend_param_list-HeatmapAnnotation-method}
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 \alias{get_legend_param_list,HeatmapAnnotation-method}
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-\alias{get_legend_param_list}
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 \title{
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 Get a List of Annotation Legend Parameters
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 }
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@@ -26,8 +25,8 @@ A list.
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 \author{
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 Zuguang Gu <z.gu@dkfz.de>
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 }
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+\alias{get_legend_param_list}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -29,5 +29,4 @@ All the values are measured with \code{native} coordinate.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -22,5 +22,4 @@ general method. It applies \code{\link[grid]{grid.draw}} on the \code{grob} slot
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -1,6 +1,5 @@
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 \name{heatmap_legend_size-HeatmapList-method}
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 \alias{heatmap_legend_size,HeatmapList-method}
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-\alias{heatmap_legend_size}
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 \title{
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 Size of the heatmap legend viewport
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 }
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@@ -26,8 +25,8 @@ A \code{\link[grid]{unit}} object.
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 \author{
27 26
 Zuguang Gu <z.gu@dkfz.de>
28 27
 }
28
+\alias{heatmap_legend_size}
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -18,5 +18,4 @@ Height of the HeatmapAnnotation Object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -21,5 +21,4 @@ The returned unit x is always in \code{mm}.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -18,5 +18,4 @@ Height of the SingleAnnotation object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -18,5 +18,4 @@ height(x, ...)
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -20,5 +20,4 @@ Assign the Height to the AnnotationFunction Object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -20,5 +20,4 @@ Assign the Height to the HeatmapAnnotation Object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -20,5 +20,4 @@ Assign the Height to the SingleAnnotation Object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -20,5 +20,4 @@ height(x, ...) <- value
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Grob width for annotation_axis
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Grob height for packed_legends
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Grob height for legend_body
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Grob height for packed_legends
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -25,5 +25,4 @@ will also be sychronized in \code{\link{ht_opt}}.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
... ...
@@ -17,5 +17,4 @@ Number of Annotations
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 \examples{
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 # There is no example
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 NULL
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-
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 }
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@@ -17,5 +17,4 @@ Length of the HeatmapList object
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 \examples{
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 # There is no example
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 NULL
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-
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 }
22 21
similarity index 72%
23 22
rename from man/list_component.rd
24 23
rename to man/list_components.rd
... ...
@@ -1,5 +1,5 @@
1
-\name{list_component}
2
-\alias{list_component}
1
+\name{list_components}
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+\alias{list_components}
3 3
 \title{
4 4
 List All Heatmap Components
5 5
 }
... ...
@@ -7,7 +7,7 @@ List All Heatmap Components
7 7
 List All Heatmap Components
8 8
 }
9 9
 \usage{
10
-list_component()
10
+list_components()
11 11
 }
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 \value{
13 13
 A vector of viewport names.
... ...
@@ -15,5 +15,4 @@ A vector of viewport names.
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 \examples{
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 # There is no example
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 NULL
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-
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 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{make_column_cluster-Heatmap-method}
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 \alias{make_column_cluster,Heatmap-method}
3
-\alias{make_column_cluster}
4 3
 \title{
5 4
 Make Cluster on Columns
6 5
 }
... ...
@@ -29,8 +28,8 @@ A \code{\link{Heatmap-class}} object.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{make_column_cluster}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
... ...
@@ -32,5 +32,4 @@ Zuguang Gu <z.gu@dkfz.de>
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
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-
36 35
 }
... ...
@@ -133,5 +133,4 @@ Zuguang Gu <z.gu@dkfz.de>
133 133
 \examples{
134 134
 # There is no example
135 135
 NULL
136
-
137 136
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{make_row_cluster-Heatmap-method}
2 2
 \alias{make_row_cluster,Heatmap-method}
3
-\alias{make_row_cluster}
4 3
 \title{
5 4
 Make Cluster on Rows
6 5
 }
... ...
@@ -28,8 +27,8 @@ A \code{\link{Heatmap-class}} object.
28 27
 \author{
29 28
 Zuguang Gu <z.gu@dkfz.de>
30 29
 }
30
+\alias{make_row_cluster}
31 31
 \examples{
32 32
 # There is no example
33 33
 NULL
34
-
35 34
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{map_to_colors-ColorMapping-method}
2 2
 \alias{map_to_colors,ColorMapping-method}
3
-\alias{map_to_colors}
4 3
 \title{
5 4
 Map Values to Colors
6 5
 }
... ...
@@ -35,3 +34,4 @@ col_fun = colorRamp2(c(0, 1), c("white", "red"))
35 34
 cm = ColorMapping(col_fun = col_fun)
36 35
 map_to_colors(cm, runif(10))
37 36
 }
37
+\alias{map_to_colors}
... ...
@@ -17,5 +17,4 @@ Names of the heatmaps/annotations
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -17,5 +17,4 @@ Number of Columns in the Heatmap
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -18,5 +18,4 @@ Number of Observations
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -21,5 +21,4 @@ It returns the \code{n} slot of the annotaton function. If it does not exist, it
21 21
 \examples{
22 22
 # There is no example
23 23
 NULL
24
-
25 24
 }
... ...
@@ -17,5 +17,4 @@ Number of Rows in the Heatmap
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -76,5 +76,4 @@ Zuguang Gu <z.gu@dkfz.de>
76 76
 \examples{
77 77
 # There is no example
78 78
 NULL
79
-
80 79
 }
... ...
@@ -39,5 +39,4 @@ Zuguang Gu <z.gu@dkfz.de>
39 39
 \examples{
40 40
 # There is no example
41 41
 NULL
42
-
43 42
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{prepare-Heatmap-method}
2 2
 \alias{prepare,Heatmap-method}
3
-\alias{prepare}
4 3
 \title{
5 4
 Prepare the Heatmap
6 5
 }
... ...
@@ -34,8 +33,8 @@ The \code{\link{Heatmap-class}} object.
34 33
 \author{
35 34
 Zuguang Gu <z.gu@dkfz.de>
36 35
 }
36
+\alias{prepare}
37 37
 \examples{
38 38
 # There is no example
39 39
 NULL
40
-
41 40
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{resize-HeatmapAnnotation-method}
2 2
 \alias{resize,HeatmapAnnotation-method}
3
-\alias{resize}
4 3
 \title{
5 4
 Resize the Width or Height of Heatmap Annotations
6 5
 }
... ...
@@ -41,8 +40,8 @@ the basic rule is:
41 40
      and \code{anno_simple_size} is disabled.
42 41
 6. If \code{simple_anno_size_adjust} is \code{FALSE}, the size of the simple annotations will not change.
43 42
 }
43
+\alias{resize}
44 44
 \examples{
45 45
 # There is no example
46 46
 NULL
47
-
48 47
 }
... ...
@@ -29,5 +29,4 @@ Zuguang Gu <z.gu@dkfz.de>
29 29
 \examples{
30 30
 # There is no example
31 31
 NULL
32
-
33 32
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_barplot}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_boxplot}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_density}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_histogram}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_link}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_points}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -25,5 +25,4 @@ See help page of \code{\link{anno_text}}
25 25
 \examples{
26 26
 # There is no example
27 27
 NULL
28
-
29 28
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{set_component_height-Heatmap-method}
2 2
 \alias{set_component_height,Heatmap-method}
3
-\alias{set_component_height}
4 3
 \title{
5 4
 Set Height of Heatmap Component
6 5
 }
... ...
@@ -30,8 +29,8 @@ The \code{\link{Heatmap-class}} object.
30 29
 \author{
31 30
 Zuguang Gu <z.gu@dkfz.de>
32 31
 }
32
+\alias{set_component_height}
33 33
 \examples{
34 34
 # There is no example
35 35
 NULL
36
-
37 36
 }
... ...
@@ -1,6 +1,5 @@
1 1
 \name{set_component_width-Heatmap-method}
2 2
 \alias{set_component_width,Heatmap-method}
3
-\alias{set_component_width}
4 3
 \title{
5 4
 Set Width of Heatmap Component
6 5
 }
... ...
@@ -29,8 +28,8 @@ The \code{\link{Heatmap-class}} object.
29 28
 \author{
30 29
 Zuguang Gu <z.gu@dkfz.de>
31 30
 }
31
+\alias{set_component_width}
32 32
 \examples{
33 33
 # There is no example
34 34
 NULL
35
-
36 35
 }
... ...
@@ -17,5 +17,4 @@ Print the AnnotationFunction Object
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
... ...
@@ -27,5 +27,4 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 \examples{
28 28
 # There is no example
29 29
 NULL
30
-
31 30
 }
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
... ...
@@ -24,5 +24,4 @@ This function returns no value.
24 24
 \examples{
25 25
 # There is no example
26 26
 NULL
27
-
28 27
 }
... ...
@@ -23,5 +23,4 @@ Zuguang Gu <z.gu@dkfz.de>
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
... ...
@@ -21,5 +21,4 @@ It returns the width if it is a row annotation and the height if it is a column
21 21
 \examples{
22 22
 # There is no example
23 23
 NULL
24
-
25 24
 }
... ...
@@ -21,5 +21,4 @@ It returns the width if it is a row annotation and the height if it is a column
21 21
 \examples{
22 22
 # There is no example
23 23
 NULL
24
-
25 24
 }
... ...
@@ -18,5 +18,4 @@ size(x, ...)
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -23,5 +23,4 @@ It assigns the width if it is a row annotation and the height if it is a column
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
... ...
@@ -23,5 +23,4 @@ It assigns to the width if it is a row annotation and the height if it is a colu
23 23
 \examples{
24 24
 # There is no example
25 25
 NULL
26
-
27 26
 }
... ...
@@ -20,5 +20,4 @@ size(x, ...) <- value
20 20
 \examples{
21 21
 # There is no example
22 22
 NULL
23
-
24 23
 }
... ...
@@ -18,5 +18,4 @@ subset_matrix_by_row(x, i)
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -18,5 +18,4 @@ subset_vector(x, i)
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -18,5 +18,4 @@ Print the Summary of a Heatmap
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -27,5 +27,4 @@ Zuguang Gu <z.gu@dkfz.de>
27 27
 \examples{
28 28
 # There is no example
29 29
 NULL
30
-
31 30
 }
... ...
@@ -18,5 +18,4 @@ Width of the HeatmapAnnotation Object
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -21,5 +21,4 @@ The returned unit x is always in \code{mm}.
21 21
 \examples{
22 22
 # There is no example
23 23
 NULL
24
-
25 24
 }
... ...
@@ -18,5 +18,4 @@ Width of the SingleAnnotation Object
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -18,5 +18,4 @@ width(x, ...)
18 18
 \examples{
19 19
 # There is no example
20 20
 NULL
21
-
22 21
 }
... ...
@@ -20,5 +20,4 @@ Assign the Width to the AnnotationFunction Object
20 20
 \examples{
21 21
 # There is no example
22 22
 NULL
23
-
24 23
 }
... ...
@@ -20,5 +20,4 @@ Assign the Width to the HeatmapAnnotation Object
20 20
 \examples{
21 21
 # There is no example
22 22
 NULL
23
-
24 23
 }
... ...
@@ -20,5 +20,4 @@ Assign the Width to the SingleAnnotation Object
20 20
 \examples{
21 21
 # There is no example
22 22
 NULL
23
-
24 23
 }
... ...
@@ -20,5 +20,4 @@ width(x, ...) <- value
20 20
 \examples{
21 21
 # There is no example
22 22
 NULL
23
-
24 23
 }
... ...
@@ -17,5 +17,4 @@ Grob width for annotation_axis
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -17,5 +17,4 @@ Grob width for packed_legends
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -17,5 +17,4 @@ Grob width for legend_body
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }
... ...
@@ -17,5 +17,4 @@ Grob width for packed_legends
17 17
 \examples{
18 18
 # There is no example
19 19
 NULL
20
-
21 20
 }